RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZC3H7BQ9UGR2 993 aaKnown RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 KRT37O76014 449 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 NCF2P19878 526 aaPredicted RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 CACNA2D1P54289 1103 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 PSMD6Q15008 389 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 RSPH3Q86UC2 560 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 SLC26A7Q8TE54 656 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 DENND1AQ8TEH3 1009 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 ATXN7L3BQ96GX2 97 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 SYNJ2BP-COX16A0A087WUM0 186 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 ZC3H11AO75152 810 aaKnown RBP eCLIP15.14■□□□□ 0.01
VPS35-210ENST00000568784 PSMG1O95456 288 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 IGBP1P78318 339 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TCEAL1Q15170 157 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 IZUMO2Q6UXV1 221 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.14■□□□□ 0.01
VPS35-210ENST00000568784 NDUFAF2Q8N183 169 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 OXNAD1Q96HP4 312 aaPredicted RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 SERAC1Q96JX3 654 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 PPP1R36Q96LQ0 422 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 ADPGKQ9BRR6 497 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TRIM56Q9BRZ2 755 aaKnown RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.14■□□□□ 0.01
VPS35-210ENST00000568784 DDX56Q9NY93 547 aaKnown RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 TAS2R1Q9NYW7 299 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 COX16Q9P0S2 106 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 POLIQ9UNA4 740 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TBX10O75333 385 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 C4BPAP04003 597 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 KRT7P08729 469 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 MMP8P22894 467 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 AMPD1P23109 780 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 PAPOLAP51003 745 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 DENND1BQ6P3S1 775 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS35-210ENST00000568784 CRLF3Q8IUI8 442 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 TMEM130Q8N3G9 435 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 HEXIM2Q96MH2 286 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 SRPK1Q96SB4 655 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 QTRT2Q9H974 415 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 ZNF302Q9NR11 478 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 MTO1Q9Y2Z2 717 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 H0YCG3 227 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 M0QYV0 167 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 PEX10O60683 326 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 LGSNQ5TDP6 509 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 SLFN12LQ6IEE8 588 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 B3GNT9Q6UX72 402 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 MTBPQ96DY7 904 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 ATRNL1Q5VV63 1379 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 TNNC2P02585 160 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 CDKN2BP42772 138 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 ATXN3P54252 364 aaPredicted RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 HMGCS2P54868 508 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 CDK16Q00536 496 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 SLC34A1Q06495 639 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 CCNJLQ8IV13 435 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 NSUN6Q8TEA1 469 aaKnown RBP15.13■□□□□ 0.01
VPS35-210ENST00000568784 NDE1Q9NXR1 346 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 ZNF536O15090 1300 aa15.13■□□□□ 0.01
VPS35-210ENST00000568784 RNF149Q8NC42 400 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 NETO2Q8NC67 525 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 TFAP2BQ92481 460 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 E2F7Q96AV8 911 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 PACSIN3Q9UKS6 424 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.12■□□□□ 0.01
VPS35-210ENST00000568784 TCRBV9S1A1TA0A576 114 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 TYROBPO43914 113 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 XKR3Q5GH77 459 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 RSBN1LQ6PCB5 846 aaPredicted RBP15.12■□□□□ 0.01
VPS35-210ENST00000568784 PHF13Q86YI8 300 aaPredicted RBP15.12■□□□□ 0.01
VPS35-210ENST00000568784 ACSS3Q9H6R3 686 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 SEPT10Q9P0V9 454 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 TXNDC16Q9P2K2 825 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 SPATA31A6Q5VVP1 1343 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 PRPSAP2O60256 369 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 LDHAP00338 332 aaKnown RBP15.12■□□□□ 0.01
VPS35-210ENST00000568784 MCL1Q07820 350 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 GRAMD1BQ3KR37 738 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 TTC13Q8NBP0 860 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 ANGPTL2Q9UKU9 493 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 GJA3Q9Y6H8 435 aa15.12■□□□□ 0.01
VPS35-210ENST00000568784 WDR46O15213 610 aaKnown RBP15.11■□□□□ 0.01
VPS35-210ENST00000568784 WFS1O76024 890 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 TOP3BO95985 862 aaKnown RBP15.11■□□□□ 0.01
VPS35-210ENST00000568784 SAT1P21673 171 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 IL1R2P27930 398 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 BST1Q10588 318 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 DUOXA2Q1HG44 320 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 EFHC2Q5JST6 749 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 C16orf46Q6P387 395 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 TAS1R3Q7RTX0 852 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 IGDCC3Q8IVU1 814 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 SAMD3Q8N6K7 520 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 CEP120Q8N960 986 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 USP6NLQ92738 828 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 NIF3L1Q9GZT8 377 aa15.11■□□□□ 0.01
VPS35-210ENST00000568784 COL16A1Q07092 1604 aaPredicted RBP15.11■□□□□ 0.01
VPS35-210ENST00000568784 ACO1P21399 889 aaKnown RBP15.11■□□□□ 0.01
VPS35-210ENST00000568784 SP100P23497 879 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms