RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FAM78AQ5JUQ0 283 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 CBWD5Q5RIA9 395 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 TCEAL6Q6IPX3 200 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 SLC8B1Q6J4K2 584 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 CACNA2D4Q7Z3S7 1137 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 ZC3H3Q8IXZ2 948 aaKnown RBP14.84□□□□□ -0.03
CLN3-235ENST00000568497 GATA6Q92908 595 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 TCEAL3Q969E4 200 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 TSPAN18Q96SJ8 248 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 SRRTQ9BXP5 876 aaKnown RBP14.84□□□□□ -0.03
CLN3-235ENST00000568497 TMEM63CQ9P1W3 806 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 HMGXB4Q9UGU5 601 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 MYBPHLA2RUH7 354 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 MTMR11A4FU01 709 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 TAF4O00268 1085 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ZNF263O14978 683 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 HUS1O60921 280 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ABLIM3O94929 683 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 LRG1P02750 347 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 CYP11A1P05108 521 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 KRT13P13646 458 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 RPL13P26373 211 aaKnown RBP14.83□□□□□ -0.04
CLN3-235ENST00000568497 HOXA6P31267 233 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 HOXC13P31276 330 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 TWF1Q12792 350 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 LRMPQ12912 555 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 NFIL3Q16649 462 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ZNF699Q32M78 642 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ZACNQ401N2 412 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 SH3PXD2AQ5TCZ1 1133 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 KBTBD6Q86V97 674 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 WDR5BQ86VZ2 330 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 METTL23Q86XA0 190 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 LRRC52Q8N7C0 313 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 FAM200AQ8TCP9 573 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 TMC2Q8TDI7 906 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 CSGALNACT1Q8TDX6 532 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 GIPC2Q8TF65 315 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 TCEAL4Q96EI5 215 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 DHTKD1Q96HY7 919 aaPredicted RBP14.83□□□□□ -0.04
CLN3-235ENST00000568497 SEPT5Q99719 369 aaPredicted RBP14.83□□□□□ -0.04
CLN3-235ENST00000568497 CORO1BQ9BR76 489 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ZCWPW1Q9H0M4 648 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 C2orf42Q9NWW7 574 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 ABI2Q9NYB9 513 aaPredicted RBP14.83□□□□□ -0.04
CLN3-235ENST00000568497 GTF3C4Q9UKN8 822 aa14.83□□□□□ -0.04
CLN3-235ENST00000568497 R3HCC1Q9Y3T6 440 aaKnown RBP14.83□□□□□ -0.04
CLN3-235ENST00000568497 C4orf47A7E2U8 309 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 CALCAP01258 141 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 PTPN2P17706 415 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 PXNP49023 591 aaPredicted RBP14.82□□□□□ -0.04
CLN3-235ENST00000568497 KPNA1P52294 538 aaPredicted RBP14.82□□□□□ -0.04
CLN3-235ENST00000568497 MLLT6P55198 1093 aaPredicted RBP14.82□□□□□ -0.04
CLN3-235ENST00000568497 CLDN10P78369 228 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 FKBP3Q00688 224 aaKnown RBP14.82□□□□□ -0.04
CLN3-235ENST00000568497 STIM1Q13586 685 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 MYBPC2Q14324 1141 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 CCDC40Q4G0X9 1142 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 COBLL1Q53SF7 1204 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 DAB2IPQ5VWQ8 1189 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 KIAA1211LQ6NV74 962 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 VITQ6UXI7 678 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 C11orf57Q6ZUT1 292 aaPredicted RBP14.82□□□□□ -0.04
CLN3-235ENST00000568497 OR6B3Q8NGW1 331 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 ZNF461Q8TAF7 563 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 GAB3Q8WWW8 586 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 TATDN2Q93075 761 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 CRTAC1Q9NQ79 661 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 VPS45Q9NRW7 570 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 CEP72Q9P209 647 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 YIPF1Q9Y548 306 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 INSL5Q9Y5Q6 135 aa14.82□□□□□ -0.04
CLN3-235ENST00000568497 SLC38A8A6NNN8 435 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 CLDN5O00501 218 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 MICAL2O94851 1124 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 CYP2F1P24903 491 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 ELF1P32519 619 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 PNPLA4P41247 253 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 CCR2P41597 374 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 NLRP12P59046 1061 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 TNNC1P63316 161 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 APBA1Q02410 837 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 MYO1EQ12965 1108 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 PRSS36Q5K4E3 855 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 CAVIN1Q6NZI2 390 aaKnown RBP14.81□□□□□ -0.04
CLN3-235ENST00000568497 C1orf228Q6PIY5 440 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 INTS8Q75QN2 995 aaKnown RBP14.81□□□□□ -0.04
CLN3-235ENST00000568497 YAF2Q8IY57 180 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 DEPDC1BQ8WUY9 529 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 MSANTD3Q96H12 275 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 ASB16Q96NS5 453 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 TWNKQ96RR1 684 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 ARID3AQ99856 593 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 DNAJC25Q9H1X3 360 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 GDAP2Q9NXN4 497 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 AFF4Q9UHB7 1163 aaKnown RBP14.81□□□□□ -0.04
CLN3-235ENST00000568497 WASF3Q9UPY6 502 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 PCDHGA5Q9Y5G8 931 aa14.81□□□□□ -0.04
CLN3-235ENST00000568497 OR6C75A6NL08 312 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 GOLGA6L22H0YM25 854 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms