RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 XXYLT1Q8NBI6 393 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 RNF214Q8ND24 703 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 ENOX1Q8TC92 643 aaKnown RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 ZFYVE19Q96K21 471 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 PPP1R10Q96QC0 940 aaKnown RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 HHIPQ96QV1 700 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 BPIFA3Q9BQP9 254 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 CCDC94Q9BW85 323 aaPredicted RBP12.15□□□□□ -0.46
CLN3-226ENST00000567160 FBXL5Q9UKA1 691 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 FRMD4BQ9Y2L6 1034 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 NFE2L3Q9Y4A8 694 aa12.15□□□□□ -0.46
CLN3-226ENST00000567160 ABCA7Q8IZY2 2146 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 FAM221BA6H8Z2 402 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 BECN2A8MW95 431 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 FAM189A1O60320 539 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 ADRB2P07550 413 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 CPB1P15086 417 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 GRM5P41594 1212 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 EPHB3P54753 998 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 SIM1P81133 766 aaPredicted RBP12.14□□□□□ -0.47
CLN3-226ENST00000567160 MYBPC2Q14324 1141 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 IQCB1Q15051 598 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 COL28A1Q2UY09 1125 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 ARHGAP15Q53QZ3 475 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 TMEM196Q5HYL7 178 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 GLRA4Q5JXX5 417 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 PMS2CLQ68D20 193 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 CRELD2Q6UXH1 353 aaPredicted RBP12.14□□□□□ -0.47
CLN3-226ENST00000567160 CBWD2Q8IUF1 395 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 CREBRFQ8IUR6 639 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 ZC3H3Q8IXZ2 948 aaKnown RBP12.14□□□□□ -0.47
CLN3-226ENST00000567160 BPIFB1Q8TDL5 484 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 FAM212AQ96EL1 285 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 CEP63Q96MT8 703 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 SAMSN1Q9NSI8 373 aaKnown RBP12.14□□□□□ -0.47
CLN3-226ENST00000567160 SLC38A7Q9NVC3 462 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 FANCLQ9NW38 375 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 EBF1Q9UH73 591 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 NUB1Q9Y5A7 615 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 MAST4O15021 2626 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 CACNA1EQ15878 2313 aa12.14□□□□□ -0.47
CLN3-226ENST00000567160 ACACAQ13085 2346 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 ZNF233A6NK53 670 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 SMTNL1A8MU46 457 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 DCLK1O15075 740 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 KIAA0391O15091 583 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 RNF40O75150 1001 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 FGFR1OPO95684 399 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 LDHAP00338 332 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 CLTAP09496 248 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 CXCL8P10145 99 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 EPB41P11171 864 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 DRD1P21728 446 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 PSMC2P35998 433 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 TNK2Q07912 1038 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 MRPL58Q14197 206 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 NCAPHQ15003 741 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 SNRNP35Q16560 246 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 KYAT1Q16773 422 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 CCDC40Q4G0X9 1142 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 FBXO43Q4G163 708 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 USP39Q53GS9 565 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 FOXR2Q6PJQ5 311 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 CD300LGQ6UXG3 332 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 SYT13Q7L8C5 426 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 GAS2L3Q86XJ1 694 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 FAM186BQ8IYM0 893 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 C3orf58Q8NDZ4 430 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 APPL2Q8NEU8 664 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 ACDQ96AP0 544 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 ACAP3Q96P50 834 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 NUSAP1Q9BXS6 441 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 CXCL16Q9H2A7 254 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 THAP9Q9H5L6 903 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 RPF1Q9H9Y2 349 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 GOLGA2P5Q9HBQ8 144 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 KIAA1586Q9HCI6 787 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 TOPORSQ9NS56 1045 aaPredicted RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 RBAKQ9NYW8 714 aaPredicted RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 EVLQ9UI08 416 aaPredicted RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 CPSF3Q9UKF6 684 aaKnown RBP12.13□□□□□ -0.47
CLN3-226ENST00000567160 YIPF1Q9Y548 306 aa12.13□□□□□ -0.47
CLN3-226ENST00000567160 SPAARA0A1B0GVQ0 90 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 GOLGA6L19H0YKK7 550 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 PODXLO00592 558 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 TRDMT1O14717 391 aaKnown RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 IKBKBO14920 756 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 SLC16A3O15427 465 aaKnown RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 IGFBP6P24592 240 aaPredicted RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 ALDH1A3P47895 512 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 DGKEP52429 567 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 YARSP54577 528 aaKnown RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 IRX4P78413 519 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 ENOX2Q16206 610 aaKnown RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 ZNF423Q2M1K9 1284 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 FSTL4Q6MZW2 842 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 FILIP1Q7Z7B0 1213 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 TMC8Q8IU68 726 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 GPIHBP1Q8IV16 184 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 FAM114A1Q8IWE2 563 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms