RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FOXN3O00409 490 aaPredicted RBP20.72■□□□□ 0.91
CLN3-225ENST00000566824 TNFRSF10BO14763 440 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 TRIM66O15016 1216 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 TADA3O75528 432 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 CAVIN2O95810 425 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 TPM2P07951 284 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 KRT5P13647 590 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 GABRR2P28476 465 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 CYP4F8P98187 520 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 TEAD2Q15562 447 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 GOLGA7BQ2TAP0 167 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 CYP4A22Q5TCH4 519 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 TTC30AQ86WT1 665 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 RNF214Q8ND24 703 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 SCAMP5Q8TAC9 235 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 MCRS1Q96EZ8 462 aa20.72■□□□□ 0.91
CLN3-225ENST00000566824 DMAP1Q9NPF5 467 aaPredicted RBP20.72■□□□□ 0.91
CLN3-225ENST00000566824 FAM207AQ9NSI2 230 aaPredicted RBP20.72■□□□□ 0.91
CLN3-225ENST00000566824 ATP8B3O60423 1300 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 MYO16Q9Y6X6 1858 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 TULP2O00295 520 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 O00370 1275 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 F11P03951 625 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 CFHP08603 1231 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 PAEPP09466 180 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 FAM200BP0CF97 657 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 CSH1P0DML2 217 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 CSH2P0DML3 217 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 VDRP11473 427 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 UCHL3P15374 230 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 ANXA13P27216 316 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 USP8P40818 1118 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 FANCCQ00597 558 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 SGO2Q562F6 1265 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 ENOSF1Q7L5Y1 443 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 OTOP3Q7RTS5 596 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 GPIHBP1Q8IV16 184 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 GJD3Q8N144 294 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 TDRD5Q8NAT2 981 aaKnown RBP20.71■□□□□ 0.91
CLN3-225ENST00000566824 KHSRPQ92945 711 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-225ENST00000566824 COL25A1Q9BXS0 654 aaPredicted RBP20.71■□□□□ 0.91
CLN3-225ENST00000566824 PLCB1Q9NQ66 1216 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 LIMD1Q9UGP4 676 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 TSPAN16Q9UKR8 245 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 CDH7Q9ULB5 785 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 USTQ9Y2C2 406 aa20.71■□□□□ 0.91
CLN3-225ENST00000566824 A0A1B0GTH6 734 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 LAMP2P13473 410 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 IFRD2Q12894 506 aaPredicted RBP20.7■□□□□ 0.9
CLN3-225ENST00000566824 RAPGEF1Q13905 1077 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 DRAP1Q14919 205 aaPredicted RBP20.7■□□□□ 0.9
CLN3-225ENST00000566824 TAF12Q16514 161 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 UBA3Q8TBC4 463 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 RSAD2Q8WXG1 361 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 MYRFLQ96LU7 910 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 ERGIC2Q96RQ1 377 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 DUSP16Q9BY84 665 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 NR2E1Q9Y466 385 aa20.7■□□□□ 0.9
CLN3-225ENST00000566824 CUL9Q8IWT3 2517 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 GOLGA6L19H0YKK7 550 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 CYP26A1O43174 497 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 ASGR2P07307 311 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 NPR3P17342 541 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 CLCN1P35523 988 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 PGFP49763 221 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 DENND5BQ6ZUT9 1274 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 ZDHHC14Q8IZN3 488 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 TRMT2BQ96GJ1 504 aaKnown RBP20.69■□□□□ 0.9
CLN3-225ENST00000566824 TTLL2Q9BWV7 592 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 ATXN3LQ9H3M9 355 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLN3-225ENST00000566824 EPS15L1Q9UBC2 864 aa20.69■□□□□ 0.9
CLN3-225ENST00000566824 ZNF197O14709 1029 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 SERPINC1P01008 464 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 SLC5A3P53794 718 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 POLR2FP61218 127 aaKnown RBP20.68■□□□□ 0.9
CLN3-225ENST00000566824 PDE4CQ08493 712 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 NR1I3Q14994 352 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 PKDCCQ504Y2 493 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 LCLAT1Q6UWP7 414 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 RNF135Q8IUD6 432 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 FAM71AQ8IYT1 594 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 NUP93Q8N1F7 819 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 ANKRD52Q8NB46 1076 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 LEMD2Q8NC56 503 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 ACSF2Q96CM8 615 aaPredicted RBP20.68■□□□□ 0.9
CLN3-225ENST00000566824 PCMTD1Q96MG8 357 aaPredicted RBP20.68■□□□□ 0.9
CLN3-225ENST00000566824 RPP25Q9BUL9 199 aaKnown RBP20.68■□□□□ 0.9
CLN3-225ENST00000566824 NLRC4Q9NPP4 1024 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 IL37Q9NZH6 218 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 KIAA1257Q9ULG3 409 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.68■□□□□ 0.9
CLN3-225ENST00000566824 NCANO14594 1321 aa20.68■□□□□ 0.9
CLN3-225ENST00000566824 NUP210Q8TEM1 1887 aaPredicted RBP20.67■□□□□ 0.9
CLN3-225ENST00000566824 GABBR2O75899 941 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 MICAL2O94851 1124 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 TRIM21P19474 475 aaKnown RBP20.67■□□□□ 0.9
CLN3-225ENST00000566824 CNGA2Q16280 664 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 FAM78AQ5JUQ0 283 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 DENND1BQ6P3S1 775 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms