RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ASPAP45381 313 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 VAMP7P51809 220 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 KPNA1P52294 538 aaPredicted RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 FAM160A1Q05DH4 1040 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 USP4Q13107 963 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 BIRC3Q13489 604 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 PNOCQ13519 176 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 RUNX3Q13761 415 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 SGSM1Q2NKQ1 1148 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 ITPRIPL2Q3MIP1 535 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 COBLL1Q53SF7 1204 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 ZNF667Q5HYK9 610 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 CEP135Q66GS9 1140 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 TRIM68Q6AZZ1 485 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 TSSK4Q6SA08 328 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 DENND5BQ6ZUT9 1274 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 SMYD4Q8IYR2 804 aaPredicted RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 ADSSL1Q8N142 457 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 CRYBG2Q8N1P7 616 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 ARL14EPQ8N8R7 260 aaPredicted RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 TAF4BQ92750 862 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 ELOVL4Q9GZR5 314 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 APOBEC3GQ9HC16 384 aaKnown RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 RBM12Q9NTZ6 932 aaKnown RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 C2orf42Q9NWW7 574 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 THG1LQ9NWX6 298 aaKnown RBP15.84■□□□□ 0.13
CLN3-213ENST00000565047 FRMD4BQ9Y2L6 1034 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 WDR87Q6ZQQ6 2873 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 DNAH14Q0VDD8 3507 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 PAPSS2O95340 614 aaPredicted RBP15.83■□□□□ 0.12
CLN3-213ENST00000565047 LMNAP02545 664 aaKnown RBP15.83■□□□□ 0.12
CLN3-213ENST00000565047 PFKLP17858 780 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 NUCB2P80303 420 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 BECN1Q14457 450 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 EDRF1Q3B7T1 1238 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 SPOPLQ6IQ16 392 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 ZC3H3Q8IXZ2 948 aaKnown RBP15.83■□□□□ 0.12
CLN3-213ENST00000565047 FUKQ8N0W3 1084 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 ZMIZ2Q8NF64 920 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 KCNK16Q96T55 309 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 RNF38Q9H0F5 515 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 EBF3Q9H4W6 596 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 FBRSL1Q9HCM7 1045 aaKnown RBP15.83■□□□□ 0.12
CLN3-213ENST00000565047 ZSCAN32Q9NX65 697 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 HMGXB4Q9UGU5 601 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 ARHGAP26Q9UNA1 814 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 PCDHGA2Q9Y5H1 932 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 ZNF292O60281 2723 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 FAM186AA6NE01 2351 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 GVINP1Q7Z2Y8 2422 aa15.83■□□□□ 0.12
CLN3-213ENST00000565047 TRAV19A0A0A6YYK7 116 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 FAM92AA1XBS5 289 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 TRDMT1O14717 391 aaKnown RBP15.82■□□□□ 0.12
CLN3-213ENST00000565047 OAS1P00973 400 aaKnown RBP15.82■□□□□ 0.12
CLN3-213ENST00000565047 HLA-DRAP01903 254 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 USP17L7P0C7H9 530 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 TRIM49P0CI25 452 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 TRIM49CP0CI26 452 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 ARSAP15289 507 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 ADAM9Q13443 819 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 PON2Q15165 354 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 TMEM196Q5HYL7 178 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 ZC3H14Q6PJT7 736 aaKnown RBP15.82■□□□□ 0.12
CLN3-213ENST00000565047 Q6ZS52 159 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 INTS8Q75QN2 995 aaKnown RBP15.82■□□□□ 0.12
CLN3-213ENST00000565047 FAM186BQ8IYM0 893 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 SPEM1Q8N4L4 309 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 TAS1R2Q8TE23 839 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 WHAMMQ8TF30 809 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 OSCP1Q8WVF1 389 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 CCDC47Q96A33 483 aaKnown RBP15.82■□□□□ 0.12
CLN3-213ENST00000565047 CSNK1G1Q9HCP0 422 aa15.82■□□□□ 0.12
CLN3-213ENST00000565047 K7ESF4 209 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 BEST1O76090 585 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 HDCP19113 662 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 PTPRZ1P23471 2315 aaPredicted RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 HOXC13P31276 330 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 PSMC2P35998 433 aaKnown RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 PRCPP42785 496 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 PPP3CCP48454 512 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 GCLMP48507 274 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 NDST1P52848 882 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 PMS1P54277 932 aaKnown RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 SLC7A9P82251 487 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 SATB1Q01826 763 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 INCA1Q0VD86 236 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 TAF10Q12962 218 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 MTF1Q14872 753 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 PDGFRLQ15198 375 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 OTOGLQ3ZCN5 2332 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 DGKKQ5KSL6 1271 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 SNX30Q5VWJ9 437 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 NAIF1Q69YI7 327 aaPredicted RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 FSTL4Q6MZW2 842 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 SCARA5Q6ZMJ2 495 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 ACOT1Q86TX2 421 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 FAM35AQ86V20 835 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 UNC93AQ86WB7 457 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 ELOA2Q8IYF1 753 aaPredicted RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 SH3RF2Q8TEC5 729 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms