RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 F8VP50 259 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 CLDN5O00501 218 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 HOXC13P31276 330 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 AP3M2P53677 418 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 ZXDBP98169 803 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 SATB1Q01826 763 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 FAM160A1Q05DH4 1040 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 RUNX3Q13761 415 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 MTF1Q14872 753 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 ZNF77Q15935 545 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 ZNF699Q32M78 642 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 ZACNQ401N2 412 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 CEP135Q66GS9 1140 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 SCARA5Q6ZMJ2 495 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 DENND5BQ6ZUT9 1274 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 DCLK2Q8N568 766 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 B3GALNT2Q8NCR0 500 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 C8orf48Q96LL4 319 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 CEP295NLQ96MC4 621 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 TTLL2Q9BWV7 592 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 ATP6V1DQ9Y5K8 247 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 CACNA1AO00555 2505 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 TRIM66O15016 1216 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 CALUO43852 315 aaPredicted RBP11.53□□□□□ -0.56
VPS39-208ENST00000564994 ZNF202O95125 648 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 CKMP06732 381 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 USP17L7P0C7H9 530 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 ANXA13P27216 316 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 CXCL12P48061 93 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 CCR3P51677 355 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 NOP14P78316 857 aaKnown RBP11.53□□□□□ -0.56
VPS39-208ENST00000564994 DMWDQ09019 674 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 USP4Q13107 963 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 LRRC32Q14392 662 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 ZNF667Q5HYK9 610 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 DGKKQ5KSL6 1271 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 NAIF1Q69YI7 327 aaPredicted RBP11.53□□□□□ -0.56
VPS39-208ENST00000564994 SPOPLQ6IQ16 392 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 PAQR9Q6ZVX9 377 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 SV2AQ7L0J3 742 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 SPEM1Q8N4L4 309 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 TMC2Q8TDI7 906 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 ATRIPQ8WXE1 791 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 FBRSL1Q9HCM7 1045 aaKnown RBP11.53□□□□□ -0.56
VPS39-208ENST00000564994 EML5Q05BV3 1969 aa11.53□□□□□ -0.56
VPS39-208ENST00000564994 SPAG17Q6Q759 2223 aa11.52□□□□□ -0.56
VPS39-208ENST00000564994 SDK1Q7Z5N4 2213 aa11.52□□□□□ -0.56
VPS39-208ENST00000564994 ZNF840PA6NDX5 716 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 K7ESF4 209 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 AKAP3O75969 853 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 ASS1P00966 412 aaKnown RBP11.52□□□□□ -0.57
VPS39-208ENST00000564994 HDCP19113 662 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 NR2F2P24468 414 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 TAF10Q12962 218 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 ORC1Q13415 861 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 KCNB1Q14721 858 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 PDGFRLQ15198 375 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 NFIL3Q16649 462 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 ZCWPW2Q504Y3 356 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 TMEM196Q5HYL7 178 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 FSTL4Q6MZW2 842 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 CC2D1AQ6P1N0 951 aaPredicted RBP11.52□□□□□ -0.57
VPS39-208ENST00000564994 PKN3Q6P5Z2 889 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 SMYD4Q8IYR2 804 aaPredicted RBP11.52□□□□□ -0.57
VPS39-208ENST00000564994 GUF1Q8N442 669 aaKnown RBP11.52□□□□□ -0.57
VPS39-208ENST00000564994 TTC16Q8NEE8 873 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 SH3RF2Q8TEC5 729 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 OSCP1Q8WVF1 389 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 RUBCNQ92622 972 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 KCNK16Q96T55 309 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 FAM126AQ9BYI3 521 aaPredicted RBP11.52□□□□□ -0.57
VPS39-208ENST00000564994 ELOVL4Q9GZR5 314 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 RNF38Q9H0F5 515 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 EPC1Q9H2F5 836 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 ECT2Q9H8V3 914 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 TRPM5Q9NZQ8 1165 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 HMGXB4Q9UGU5 601 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 ARHGAP26Q9UNA1 814 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 FRMD4BQ9Y2L6 1034 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 WNT6Q9Y6F9 365 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 RALGAPA1Q6GYQ0 2036 aa11.52□□□□□ -0.57
VPS39-208ENST00000564994 TRDMT1O14717 391 aaKnown RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 IKBKBO14920 756 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 MAPK13O15264 365 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 CLSTN1O94985 981 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 PAPSS2O95340 614 aaPredicted RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 OLFM2O95897 454 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 HLA-DRAP01903 254 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 TRIM49P0CI25 452 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 TRIM49CP0CI26 452 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 TCF3P15923 654 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 GJA4P35212 333 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 ASPAP45381 313 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 GALK1P51570 392 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 VAMP7P51809 220 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 PPP3CAQ08209 521 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 IFRD2Q12894 506 aaPredicted RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 SGSM1Q2NKQ1 1148 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 EML3Q32P44 896 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 ACOT1Q86TX2 421 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms