RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	PDZD4	Q76G19	769 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	DDX46	Q7L014	1031 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	COPS6	Q7L5N1	327 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	ZZZ3	Q8IYH5	903 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	KRT222	Q8N1A0	295 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CHST14	Q8NCH0	376 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	KIF18A	Q8NI77	898 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	KCNG4	Q8TDN1	519 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	RAPGEF4	Q8WZA2	1011 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	APPBP2	Q92624	585 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	DPF1	Q92782	380 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	RPL36AL	Q969Q0	106 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PPP1R13B	Q96KQ4	1090 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	TIGD1	Q96MW7	591 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	ORAI2	Q96SN7	254 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	DNAJC2	Q99543	621 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	LRRC2	Q9BYS8	371 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	NAT10	Q9H0A0	1025 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	HSD3B7	Q9H2F3	369 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	POFUT1	Q9H488	388 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CABP5	Q9NP86	173 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	TMEM74B	Q9NUR3	256 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	WWOX	Q9NZC7	414 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	FLRT1	Q9NZU1	646 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	TUBE1	Q9UJT0	475 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF580	Q9UK33	172 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF215	Q9UL58	517 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PCDHA7	Q9UN72	937 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	HPSE	Q9Y251	543 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	USP16	Q9Y5T5	823 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	MYH14	Q7Z406	1995 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	COL4A1	P02462	1669 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SPATA31A3	Q5VYP0	1347 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858		A0A0G2JLW4	131 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858		A0A1B0GUL7	405 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	WIPF3	A6NGB9	483 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	BECN2	A8MW95	431 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	KIF28P	B7ZC32	967 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	GOLIM4	O00461	696 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SPTLC2	O15270	562 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TP73	O15350	636 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CCP110	O43303	1012 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	PRC1	O43663	620 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	PEX1	O43933	1283 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	DHX16	O60231	1041 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	PPP6R2	O75170	966 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SLU7	O95391	586 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	MYL6B	P14649	208 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	PFKFB1	P16118	471 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CMA1	P23946	247 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ME1	P48163	572 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	NDUFA8	P51970	172 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CHN2	P52757	468 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	FOXG1	P55316	489 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SOX10	P56693	466 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SSBP2	P81877	361 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CBX1	P83916	185 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	UBE3C	Q15386	1083 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ELF2	Q15723	593 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TPD52L1	Q16890	204 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	IMMT	Q16891	758 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TAF3	Q5VWG9	929 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ARMCX5	Q6P1M9	558 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	FBXO38	Q6PIJ6	1188 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	APOA5	Q6Q788	366 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	KRT28	Q7Z3Y7	464 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	THNSL2	Q86YJ6	484 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TMEM139	Q8IV31	216 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	DRC7	Q8IY82	874 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TTC5	Q8N0Z6	440 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	MSL3	Q8N5Y2	521 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	VGLL2	Q8N8G2	317 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC191	Q8NCU4	936 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	FBXO18	Q8NFZ0	1043 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	GAB3	Q8WWW8	586 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	SARAF	Q96BY9	339 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	RNF31	Q96EP0	1072 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	C8orf76	Q96K31	380 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ISCA1	Q9BUE6	129 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	XPO4	Q9C0E2	1151 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC113	Q9H0I3	377 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TMX1	Q9H3N1	280 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	NCOA5	Q9HCD5	579 aa	Known RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	NRIP3	Q9NQ35	241 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	KLHL11	Q9NVR0	708 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	CWC25	Q9NXE8	425 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ZHX1	Q9UKY1	873 aa	Predicted RBP	2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	USP18	Q9UMW8	372 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TBC1D30	Q9Y2I9	924 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	ENTPD2	Q9Y5L3	495 aa		2.79	□□□□□ -1.96
SPG11-223	ENST00000560858	TAF1	P21675	1872 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	UBN2	Q6ZU65	1347 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	WDR17	Q8IZU2	1322 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	TAF1L	Q8IZX4	1826 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	ARFGEF1	Q9Y6D6	1849 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858		A0A087WWV3	80 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC163	A0A0D9SF12	145 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858	KLF18	A0A0U1RQI7	1052 aa		2.78	□□□□□ -1.96
SPG11-223	ENST00000560858		A0A1B0GVL5	298 aa		2.78	□□□□□ -1.96

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