RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ADORA2BP29275 332 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 TKTP29401 623 aaKnown RBP13.57□□□□□ -0.24
SNX1-211ENST00000560829 TNNT3P45378 269 aaPredicted RBP13.57□□□□□ -0.24
SNX1-211ENST00000560829 BFSP2Q13515 415 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 TRNP1Q6NT89 227 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 DSTYKQ6XUX3 929 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 SND1Q7KZF4 910 aaKnown RBP eCLIP13.57□□□□□ -0.249e-6■■□□□ 12.1
SNX1-211ENST00000560829 LRRC8DQ7L1W4 858 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 ANKS1BQ7Z6G8 1248 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 CCDC50Q8IVM0 306 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 MREGQ8N565 214 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 PAAF1Q9BRP4 392 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 DDX43Q9NXZ2 648 aaKnown RBP13.57□□□□□ -0.24
SNX1-211ENST00000560829 OGDHLQ9ULD0 1010 aa13.57□□□□□ -0.24
SNX1-211ENST00000560829 BRCA2P51587 3418 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 RNF8O76064 485 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 COL6A1P12109 1028 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 GJC1P36383 396 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 FLT3P36888 993 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 PLCB3Q01970 1234 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 SMC1AQ14683 1233 aaKnown RBP13.56□□□□□ -0.24
SNX1-211ENST00000560829 CCNG2Q16589 344 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 TAZQ16635 292 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 TIGD5Q53EQ6 642 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 KIAA0319Q5VV43 1072 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 MFSD7Q6UXD7 560 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 CD300LGQ6UXG3 332 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 SPOCD1Q6ZMY3 1216 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 PAQR9Q6ZVX9 377 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 SLC26A9Q7LBE3 791 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 RXFP2Q8WXD0 754 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 RNF25Q96BH1 459 aaPredicted RBP13.56□□□□□ -0.24
SNX1-211ENST00000560829 TRIM51Q9BSJ1 452 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 DUSP16Q9BY84 665 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 DCLK3Q9C098 648 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 ACBD3Q9H3P7 528 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 HPCAL4Q9UM19 191 aa13.56□□□□□ -0.24
SNX1-211ENST00000560829 hCG_1818297A0A087WSY0 165 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 C3orf70A6NLC5 250 aaPredicted RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 M0QZQ0 153 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 PITPNM1O00562 1244 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 DAPK3O43293 454 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 ATP2C2O75185 946 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 ODC1P11926 461 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 PDGFRAP16234 1089 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 IL1R2P27930 398 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 MIPP30301 263 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 GBP1P32455 592 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CDKN2BP42772 138 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 TFDP3Q5H9I0 405 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 SYDE1Q6ZW31 735 aaPredicted RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 SCUBE3Q8IX30 993 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CCDC105Q8IYK2 499 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CMASQ8NFW8 434 aaPredicted RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 KCTD13Q8WZ19 329 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 RAPGEF5Q92565 580 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 NCAPGQ9BPX3 1015 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CRTAC1Q9NQ79 661 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CHST7Q9NS84 486 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 FEZ2Q9UHY8 353 aaPredicted RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 CDH9Q9ULB4 789 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 FRMPD3Q5JV73 1810 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 PIK3R2O00459 728 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 B3GAT3O94766 335 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 TJP3O95049 919 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 TRUB2O95900 331 aaKnown RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 FAM153BP0C7A2 387 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 NPR3P17342 541 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 ACAT1P24752 427 aaKnown RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 PCSK1P29120 753 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 SLC8A3P57103 927 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 FAM153CQ494X1 144 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 CCDC14Q49A88 953 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 DRICH1Q6PGQ1 229 aaPredicted RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 DCLRE1AQ6PJP8 1040 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 GLB1LQ6UWU2 654 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 DDX42Q86XP3 938 aaKnown RBP eCLIP13.55□□□□□ -0.24
SNX1-211ENST00000560829 C1orf54Q8WWF1 131 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 GDAP1L1Q96MZ0 367 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 SYT15Q9BQS2 421 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 HEMGNQ9BXL5 484 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 KLHL11Q9NVR0 708 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 FAM153AQ9UHL3 310 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 DSEQ9UL01 958 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 USP18Q9UMW8 372 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 INPP5FQ9Y2H2 1132 aa13.55□□□□□ -0.24
SNX1-211ENST00000560829 R3HDM2Q9Y2K5 976 aaKnown RBP13.55□□□□□ -0.24
SNX1-211ENST00000560829 LRRD1A4D1F6 860 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 PI4K2BG5E9Z4 385 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 ECEL1O95672 775 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 PTPN9P43378 593 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 DSC1Q08554 894 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 GPS2Q13227 327 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 HLTFQ14527 1009 aaKnown RBP eCLIP13.54□□□□□ -0.24
SNX1-211ENST00000560829 GPNMBQ14956 572 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 LLGL1Q15334 1064 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 TAF5Q15542 800 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 MDH1BQ5I0G3 518 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 CLEC20AQ6ZU45 233 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 CYP4V2Q6ZWL3 525 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms