RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SOAT2O75908 522 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 GFPT2O94808 682 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 CYP11B1P15538 503 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 SLC5A3P53794 718 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 MAP3K7CLP57077 242 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 SNX16P57768 344 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 MRPS5P82675 430 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 ASIC2Q16515 512 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 ARHGAP15Q53QZ3 475 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 SFMBT2Q5VUG0 894 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 PTCRAQ6ISU1 281 aaPredicted RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 PAQR9Q6ZVX9 377 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 SLC47A2Q86VL8 602 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 NUP93Q8N1F7 819 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 PDZD8Q8NEN9 1154 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 IPO4Q8TEX9 1081 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 ATXN2LQ8WWM7 1075 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 ZNF606Q8WXB4 792 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 TRMT2BQ96GJ1 504 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 LPIN3Q9BQK8 851 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 CORO1BQ9BR76 489 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 UBXN6Q9BZV1 441 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 TTYH3Q9C0H2 523 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 S1PR5Q9H228 398 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 LRRC4Q9HBW1 653 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 WDR6Q9NNW5 1121 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 AVENQ9NQS1 362 aaPredicted RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 PCDHGC3Q9UN70 934 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 MRPS23Q9Y3D9 190 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 PTPRDP23468 1912 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 GOLGA6L3A6NEY3 463 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 MICAL2O94851 1124 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 LSM8O95777 96 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 RHOP08100 348 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 PNMA6AP0CW24 399 aaPredicted RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 MYL4P12829 197 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 FSHRP23945 695 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 CLCN1P35523 988 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 PLA2G4AP47712 749 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 PPP3CCP48454 512 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 GPR15P49685 360 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 ZNF75DP51815 510 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 CDR1P51861 262 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 EPHA5P54756 1037 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 ZBED6P86452 979 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 PDE4CQ08493 712 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 SMAD2Q15796 467 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 PTPN21Q16825 1174 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 TSR1Q2NL82 804 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 PPP1R2P3Q6NXS1 205 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 TRIM72Q6ZMU5 477 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 GRASPQ7Z6J2 395 aaPredicted RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 DNAJB7Q7Z6W7 309 aaPredicted RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 PIGZQ86VD9 579 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 VPS36Q86VN1 386 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 TTC30AQ86WT1 665 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 CNGA4Q8IV77 575 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 SIX6OS1Q8N1H7 587 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 EPS8L1Q8TE68 723 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 OVCA2Q8WZ82 227 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 TFAP2BQ92481 460 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 SUSD6Q92537 303 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 SECISBP2LQ93073 1101 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 MYRFLQ96LU7 910 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 KCNK16Q96T55 309 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 SMOQ99835 787 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 MIS12Q9H081 205 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 ZNHIT6Q9NWK9 470 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 DNMT3BQ9UBC3 853 aaKnown RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 CAPN11Q9UMQ6 739 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 MAGED2Q9UNF1 606 aaPredicted RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 NR2E1Q9Y466 385 aa10.64□□□□□ -0.71
USP3-216ENST00000559873 ZFP37Q9Y6Q3 630 aaPredicted RBP10.64□□□□□ -0.71
USP3-216ENST00000559873 NCANO14594 1321 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 SPTBN5Q9NRC6 3674 aaKnown RBP10.63□□□□□ -0.71
USP3-216ENST00000559873 SART1O43290 800 aaKnown RBP10.63□□□□□ -0.71
USP3-216ENST00000559873 GYPCP04921 128 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 DDX6P26196 483 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP3-216ENST00000559873 YWHAQP27348 245 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 GABRR2P28476 465 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 CASP14P31944 242 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 ACADSBP45954 432 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 CACNA2D1P54289 1103 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 CDR2Q01850 454 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 ARID5AQ03989 594 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 IFRD2Q12894 506 aaPredicted RBP10.63□□□□□ -0.71
USP3-216ENST00000559873 SDHAF4Q5VUM1 108 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 GET4Q7L5D6 327 aaPredicted RBP10.63□□□□□ -0.71
USP3-216ENST00000559873 OTOP3Q7RTS5 596 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 TMC6Q7Z403 805 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 TADA2BQ86TJ2 420 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 ARHGAP18Q8N392 663 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 TDRD5Q8NAT2 981 aaKnown RBP10.63□□□□□ -0.71
USP3-216ENST00000559873 TMEM35BQ8NCS4 154 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 STKLD1Q8NE28 680 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 ZMIZ2Q8NF64 920 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 GPR152Q8TDT2 470 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 STK32AQ8WU08 396 aa10.63□□□□□ -0.71
USP3-216ENST00000559873 KCTD13Q8WZ19 329 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms