RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 EPHB4P54760 987 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 DR1Q01658 176 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 DSC1Q08554 894 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 CUL1Q13616 776 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 HADHQ16836 314 aaKnown RBP13.34□□□□□ -0.27
USP3-213ENST00000559711 NOMO2Q5JPE7 1267 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 CLLU1OSQ5K130 101 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 TXNRD3NBQ6F5E7 133 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 TRNP1Q6NT89 227 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 EMBQ6PCB8 327 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 ANKRD33Q7Z3H0 272 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 SCUBE3Q8IX30 993 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 RXFP2Q8WXD0 754 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 PIWIL1Q96J94 861 aaKnown RBP13.34□□□□□ -0.27
USP3-213ENST00000559711 SLITRK1Q96PX8 696 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 SYT15Q9BQS2 421 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 PLEKHA4Q9H4M7 779 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 ELAC1Q9H777 363 aaKnown RBP13.34□□□□□ -0.27
USP3-213ENST00000559711 CRTAC1Q9NQ79 661 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 TMEM161AQ9NX61 479 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 KANSL3Q9P2N6 904 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 DSEQ9UL01 958 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 CDH9Q9ULB4 789 aa13.34□□□□□ -0.27
USP3-213ENST00000559711 ESYT3A0FGR9 886 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 ENPP3O14638 875 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 RRP9O43818 475 aaKnown RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 RNF8O76064 485 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 MYCP01106 439 aaPredicted RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 NPR3P17342 541 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 IL1R2P27930 398 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 PCSK1P29120 753 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 FLT3P36888 993 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 MNX1P50219 401 aaPredicted RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 DRG2P55039 364 aaKnown RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 SLC8A3P57103 927 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 NNTQ13423 1086 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 CASP8Q14790 479 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 MDH1BQ5I0G3 518 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 TTC27Q6P3X3 843 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 CCDC137Q6PK04 289 aaKnown RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 SLC26A9Q7LBE3 791 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 ANKS1BQ7Z6G8 1248 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 CCDC50Q8IVM0 306 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 GSPT2Q8IYD1 628 aaKnown RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 DBF4BQ8NFT6 615 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 RSPH1Q8WYR4 309 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 KCTD13Q8WZ19 329 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 CAVIN3Q969G5 261 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 SUSD3Q96L08 255 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 ERP44Q9BS26 406 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 B3GNT5Q9BYG0 378 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 CRISPLD2Q9H0B8 497 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 HOMER3Q9NSC5 361 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 OGFRQ9NZT2 677 aa13.33□□□□□ -0.28
USP3-213ENST00000559711 UTP11Q9Y3A2 253 aaKnown RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 TIMM13Q9Y5L4 95 aaPredicted RBP13.33□□□□□ -0.28
USP3-213ENST00000559711 ARHGEF37A1IGU5 675 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 KRT1P04264 644 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 MIPP30301 263 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 GJC1P36383 396 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 BRCC3P46736 316 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 TAF5Q15542 800 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 TRADDQ15628 312 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 TAZQ16635 292 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 CCDC142Q17RM4 750 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 CCDC14Q49A88 953 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 DUPD1Q68J44 220 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 MFSD7Q6UXD7 560 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 PIGZQ86VD9 579 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 METTL23Q86XA0 190 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 JAMLQ86YT9 394 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 CMASQ8NFW8 434 aaPredicted RBP13.32□□□□□ -0.28
USP3-213ENST00000559711 MYCBPAPQ8TBZ2 947 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 URGCPQ8TCY9 931 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 IFT81Q8WYA0 676 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 RAPGEF5Q92565 580 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 APBB2Q92870 758 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 SLCO2A1Q92959 643 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 RNF25Q96BH1 459 aaPredicted RBP13.32□□□□□ -0.28
USP3-213ENST00000559711 RTP3Q9BQQ7 232 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 ACBD6Q9BR61 282 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 HEMGNQ9BXL5 484 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 RAB17Q9H0T7 212 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 VIPAS39Q9H9C1 493 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 NFU1Q9UMS0 254 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 EFR3BQ9Y2G0 817 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 FRMPD3Q5JV73 1810 aa13.32□□□□□ -0.28
USP3-213ENST00000559711 MYBPHLA2RUH7 354 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 C3orf70A6NLC5 250 aaPredicted RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 PI4K2BG5E9Z4 385 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 TMEM189-UBE2V1I3L0A0 370 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 CLDN5O00501 218 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 B4GALT3O60512 393 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 PQBP1O60828 265 aaKnown RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 DDHD2O94830 711 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 TRUB2O95900 331 aaKnown RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 TYMPP19971 482 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 ECHS1P30084 290 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 CDKN2BP42772 138 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 SMC1AQ14683 1233 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms