RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 GABRQQ9UN88 632 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 BTBD19C9JJ37 291 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 H3BNX3 289 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 FZD9O00144 591 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 PSMD9O00233 223 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 ERC2O15083 957 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 A1BGP04217 495 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 CYP2C9P11712 490 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 XRCC6P12956 609 aaKnown RBP eCLIP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 PRF1P14222 555 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 ALDH5A1P51649 535 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 LINC00205P59089 165 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 SUMO2P61956 95 aaKnown RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 HTRA4P83105 476 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 KRT17Q04695 432 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 MGAT5BQ3V5L5 792 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 TMEM63BQ5T3F8 832 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 C10orf25Q5T742 122 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 MEX3CQ5U5Q3 659 aaKnown RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 EMC10Q5UCC4 262 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 DENND2CQ68D51 928 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 ANO7Q6IWH7 933 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 KRTAP5-11Q6L8G4 156 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 SIRT6Q8N6T7 355 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 OSR1Q8TAX0 266 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 THAP7Q9BT49 309 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-205ENST00000558088 SLC13A1Q9BZW2 595 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 SPC25Q9HBM1 224 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 CNNM1Q9NRU3 951 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 AMFRQ9UKV5 643 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 LRP12Q9Y561 859 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 SQORQ9Y6N5 450 aa3.43□□□□□ -1.86
VPS13C-205ENST00000558088 LY6G6EA0A0G2JKS1 128 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 FAM90A8PA6NJQ4 464 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 CD8B2A6NJW9 211 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 ADAM10O14672 748 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 FAM90A13PP0C7W8 464 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 FAM90A24PP0C7X0 464 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 PDCP20941 246 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 SOX8P57073 446 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 E2F1Q01094 437 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 ZNF91Q05481 1191 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 MTMR1Q13613 665 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 SEMA3AQ14563 771 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 KHDC1LQ5JSQ8 128 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 LVRNQ6Q4G3 990 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 PIM3Q86V86 326 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 CAND1Q86VP6 1230 aaKnown RBP3.42□□□□□ -1.86
VPS13C-205ENST00000558088 SFTPA1Q8IWL2 248 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 ACRBPQ8NEB7 543 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 VCPIP1Q96JH7 1222 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 ZC3H10Q96K80 434 aaKnown RBP3.42□□□□□ -1.86
VPS13C-205ENST00000558088 LYZL4Q96KX0 146 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 LENG8Q96PV6 779 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-205ENST00000558088 MMS19Q96T76 1030 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 TMX2Q9Y320 296 aa3.42□□□□□ -1.86
VPS13C-205ENST00000558088 hCG_1984214I3L0E3 225 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 AP4M1O00189 453 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 ABLIM3O94929 683 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 SNUPNO95149 360 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 CRYABP02511 175 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 FPR3P25089 353 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 RECQLP46063 649 aaPredicted RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MAP2K6P52564 334 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 PRKAG1P54619 331 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 ID2Q02363 134 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MYO1EQ12965 1108 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MLC1Q15049 377 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 TRIM71Q2Q1W2 868 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 USP45Q70EL2 814 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MEPCEQ7L2J0 689 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 ANKRD13BQ86YJ7 626 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 IZUMO1Q8IYV9 350 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 SLC35A4Q96G79 324 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 THOC3Q96J01 351 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 CDK5RAP3Q96JB5 506 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 CCDC8Q9H0W5 538 aaPredicted RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 ZSCAN32Q9NX65 697 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 XPR1Q9UBH6 696 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MAFFQ9ULX9 164 aa3.41□□□□□ -1.86
VPS13C-205ENST00000558088 MRPS17Q9Y2R5 130 aaKnown RBP3.41□□□□□ -1.86
VPS13C-205ENST00000558088 ZMYM2Q9UBW7 1377 aa3.4□□□□□ -1.86
VPS13C-205ENST00000558088 TCRBV5S1A1TA0A578 114 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 ALG1L2C9J202 215 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 CES2O00748 559 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 KATNA1O75449 491 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 ALPLP05186 524 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 HDCP19113 662 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 ME1P48163 572 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 THBS3P49746 956 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 WNT3P56703 355 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 PLS1Q14651 629 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 ODF1Q14990 250 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 NPY5RQ15761 445 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 PGS1Q32NB8 556 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 TMEM65Q6PI78 240 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 BCDIN3DQ7Z5W3 292 aaKnown RBP3.4□□□□□ -1.87
VPS13C-205ENST00000558088 RAB11FIP4Q86YS3 637 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 C16orf71Q8IYS4 520 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-205ENST00000558088 ABRAQ8N0Z2 381 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms