RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	RAD51C	O43502	376 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	DDHD2	O94830	711 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	HEXIM1	O94992	359 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	HSPA8	P11142	646 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	PDGFRA	P16234	1089 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	PCK1	P35558	622 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	GJC1	P36383	396 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	GJA8	P48165	433 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	CYP1B1	Q16678	543 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	PAN2	Q504Q3	1202 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	EFHC1	Q5JVL4	640 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	ZFYVE27	Q5T4F4	411 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	OVOS1	Q6IE37	1185 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	CCNI2	Q6ZMN8	369 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	SLC26A9	Q7LBE3	791 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	ZNF280B	Q86YH2	543 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	CCDC50	Q8IVM0	306 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	EMC1	Q8N766	993 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	C12orf50	Q8NA57	414 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	HDAC7	Q8WUI4	952 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	RXFP2	Q8WXD0	754 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	MRPL9	Q9BYD2	267 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	B3GNT5	Q9BYG0	378 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	UBXN6	Q9BZV1	441 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	DDX47	Q9H0S4	455 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	HOMER3	Q9NSC5	361 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	HTT	P42858	3142 aa		13.11	□□□□□ -0.31
SHMT2-233	ENST00000557529	FAM187A	A6NFU0	413 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529		I3L4J1	428 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PIK3R2	O00459	728 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	ATP8B1	O43520	1251 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	LRCH4	O75427	683 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	KRT1	P04264	644 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	LCP1	P13796	627 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SDC4	P31431	198 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PTPN7	P35236	360 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	RFC2	P35250	354 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	OR1G1	P47890	313 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	CCL23	P55773	120 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	TSPY1	Q01534	308 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SLC7A5	Q01650	507 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	DHX34	Q14147	1143 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SMC1A	Q14683	1233 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	INTS6L	Q5JSJ4	861 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	KIAA0319	Q5VV43	1072 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	DAB2IP	Q5VWQ8	1189 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	FAM171B	Q6P995	826 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PAQR9	Q6ZVX9	377 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	ADAT2	Q7Z6V5	191 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	FAM35A	Q86V20	835 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PIGZ	Q86VD9	579 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	NPAS4	Q8IUM7	802 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SCUBE3	Q8IX30	993 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	DNAJC5G	Q8N7S2	189 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PRELID2	Q8N945	189 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	EIF1AD	Q8N9N8	165 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	HASPIN	Q8TF76	798 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	MAGOHB	Q96A72	148 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SMARCD1	Q96GM5	515 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	SCLY	Q96I15	445 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	RTP3	Q9BQQ7	232 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	OSBPL8	Q9BZF1	889 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	PPP1R12C	Q9BZL4	782 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	LRRC4	Q9HBW1	653 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	GDF3	Q9NR23	364 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	KRT82	Q9NSB4	513 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	RASAL2	Q9UJF2	1139 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	TBX21	Q9UL17	535 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	NR2E1	Q9Y466	385 aa		13.1	□□□□□ -0.31
SHMT2-233	ENST00000557529	MYBPHL	A2RUH7	354 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	CLDN5	O00501	218 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	AP1G2	O75843	785 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	GABBR2	O75899	941 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	FBXO21	O94952	628 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	RARA	P10276	462 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	RALA	P11233	206 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	CYP2C18	P33260	490 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	FLT3	P36888	993 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	PTPN9	P43378	593 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	FNTA	P49354	379 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	DR1	Q01658	176 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	GUCY2D	Q02846	1103 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	SLC25A11	Q02978	314 aa	Known RBP	13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	YWHAH	Q04917	246 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	CLEC20A	Q6ZU45	233 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	SIX6OS1	Q8N1H7	587 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	PCED1B	Q96HM7	432 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	CASD1	Q96PB1	797 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	SLITRK1	Q96PX8	696 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	COLEC11	Q9BWP8	271 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	RAB17	Q9H0T7	212 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	C11orf49	Q9H6J7	331 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	EPB41L5	Q9HCM4	733 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	TMEM39A	Q9NV64	488 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	PCYOX1	Q9UHG3	505 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	AMACR	Q9UHK6	382 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	ATP11B	Q9Y2G3	1177 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	TANC1	Q9C0D5	1861 aa		13.09	□□□□□ -0.31
SHMT2-233	ENST00000557529	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.08	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms