RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	BDNF	P23560	247 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	GJB2	P29033	226 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	TIE1	P35590	1138 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	P2RY2	P41231	377 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SLC6A11	P48066	632 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	PPP3CC	P48454	512 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	BYSL	Q13895	437 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	DHCR24	Q15392	516 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	MAPRE1	Q15691	268 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	CCDC142	Q17RM4	750 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	GAB4	Q2WGN9	574 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	HSF5	Q4G112	596 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPDYC	Q5MJ68	293 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	L1TD1	Q5T7N2	865 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SYT12	Q8IV01	421 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	TMEFF1	Q8IYR6	380 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SYCP3	Q8IZU3	236 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	ALLC	Q8N6M5	410 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	TXNDC5	Q8NBS9	432 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	ZSWIM2	Q8NEG5	633 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	WHAMM	Q8TF30	809 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	RLN3	Q8WXF3	142 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPACA7	Q96KW9	195 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	FNBP1	Q96RU3	617 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	PNKP	Q96T60	521 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	RNF38	Q9H0F5	515 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	POLM	Q9NP87	494 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	EHD2	Q9NZN4	543 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SIX4	Q9UIU6	781 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	CDH9	Q9ULB4	789 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	PCDHB13	Q9Y5F0	798 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	ZZEF1	O43149	2961 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	TSC2	P49815	1807 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	ANK1	P16157	1881 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689		A0A0A0MRY4	1105 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	GOLGA8IP	A6NC78	632 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	ZNF840P	A6NDX5	716 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	GOLGA8J	A6NMD2	632 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	KLF8	O95600	359 aa	Predicted RBP	13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	APOD	P05090	189 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	GAP43	P17677	238 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	LMO2	P25791	158 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	ANXA13	P27216	316 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	DPP6	P42658	865 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	MAPK8	P45983	427 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	SLC7A9	P82251	487 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	MYO1E	Q12965	1108 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	EOGT	Q5NDL2	527 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	EMC10	Q5UCC4	262 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	DENND5B	Q6ZUT9	1274 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	FILIP1	Q7Z7B0	1213 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	ABCA7	Q8IZY2	2146 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	IL17RC	Q8NAC3	791 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	SYT15	Q9BQS2	421 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	PDE11A	Q9HCR9	933 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	TMEM74B	Q9NUR3	256 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	TBC1D7	Q9P0N9	293 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	NEUROG3	Q9Y4Z2	214 aa		13.53	□□□□□ -0.24
SHMT2-223	ENST00000556689	ZNF638	Q14966	1978 aa	Known RBP	13.52	□□□□□ -0.24
SHMT2-223	ENST00000556689	SGK1	O00141	431 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	HYAL3	O43820	417 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	KAT7	O95251	611 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	GCNT3	O95395	438 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	ABL1	P00519	1130 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	CYP17A1	P05093	508 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	PDGFRB	P09619	1106 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	TMEM191B	P0C7N4	346 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	HOXB3	P14651	431 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	ENG	P17813	658 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	RDX	P35241	583 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	EIF2D	P41214	584 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	GRIA2	P42262	883 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	PTGER3	P43115	390 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	TNFRSF4	P43489	277 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	USP46	P62068	366 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	PSMC1	P62191	440 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	CYP27A1	Q02318	531 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	SF3A1	Q15459	793 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	KIAA1211L	Q6NV74	962 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	SLC23A3	Q6PIS1	610 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	RHBDF2	Q6PJF5	856 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	LRSAM1	Q6UWE0	723 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	ARMCX6	Q7L4S7	300 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	LIMS2	Q7Z4I7	341 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	SFTPA1	Q8IWL2	248 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	PGBD3	Q8N328	593 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	FRMD1	Q8N878	549 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	NOC3L	Q8WTT2	800 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	MYLPF	Q96A32	169 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	HPDL	Q96IR7	371 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	ANKRD36BP1	Q96IX9	119 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	EPSTI1	Q96J88	318 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	TTLL2	Q9BWV7	592 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	MTMR12	Q9C0I1	747 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	PCIF1	Q9H4Z3	704 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	CCDC39	Q9UFE4	941 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms