RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CCNG2Q16589 344 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 FAM182BQ5T319 152 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 WDR93Q6P2C0 686 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 TXNRD3Q86VQ6 643 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 HORMAD1Q86X24 394 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 RNF135Q8IUD6 432 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 LRRC49Q8IUZ0 686 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 ACTRT1Q8TDG2 376 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 EME1Q96AY2 570 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 NSL1Q96IY1 281 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 KIAA1683Q9H0B3 1180 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 EFCAB1Q9HAE3 211 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 KLC4Q9NSK0 619 aa11.12□□□□□ -0.63
ACTN1-216ENST00000556083 TCP11X1B4DZS4 312 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 RTN3O95197 1032 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CAPZA2P47755 286 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MAPK7Q13164 816 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TJAP1Q5JTD0 557 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CAPRIN2Q6IMN6 1127 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TRIM48Q8IWZ4 208 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CLEC4FQ8N1N0 589 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 HIPK4Q8NE63 616 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 THAP11Q96EK4 314 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TSEN34Q9BSV6 310 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CEP44Q9C0F1 390 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PRDM5Q9NQX1 630 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 DNPEPQ9ULA0 475 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 AP4S1Q9Y587 144 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 FAM205AQ6ZU69 1335 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ERI2A8K979 691 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 HACD1B0YJ81 288 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 H3BMM5 538 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ERBB2P04626 1255 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MLNP12872 115 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PTPN3P26045 913 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MAPK8P45983 427 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 RFX5P48382 616 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PPARDQ03181 441 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ITIH4Q14624 930 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 SKIV2LQ15477 1246 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 KYNUQ16719 465 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CATSPER3Q86XQ3 398 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CASP10Q92851 521 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 VPS33AQ96AX1 596 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 LRRC1Q9BTT6 524 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MTFR1LQ9H019 292 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MANSC1Q9H8J5 431 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 C15orf38-AP3S2A0A0A6YYH1 394 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 NCK2O43639 380 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 THP07101 528 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PAEPP09466 180 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 KITP10721 976 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 GUCA1AP43080 201 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 BST2Q10589 180 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MRPL28Q13084 256 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TMED1Q13445 227 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ZNF268Q14587 947 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TMEM259Q4ZIN3 620 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PLEKHM3Q6ZWE6 761 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ADCK2Q7Z695 626 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ARPINQ7Z6K5 226 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TTC30AQ86WT1 665 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TTC30BQ8N4P2 665 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 ZNF669Q96BR6 464 aaPredicted RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 HINFPQ9BQA5 517 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 C1QTNF7Q9BXJ2 289 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TBC1D23Q9NUY8 699 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 KBTBD4Q9NVX7 518 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 THG1LQ9NWX6 298 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 SHOC2Q9UQ13 582 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 DTNAQ9Y4J8 743 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 POLRMTO00411 1230 aaKnown RBP11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CYP2B6P20813 491 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TRPM8Q7Z2W7 1104 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 SLFN11Q7Z7L1 901 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PGBD3Q8N328 593 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 TC2NQ8N9U0 490 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CPA5Q8WXQ8 436 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 LRRC39Q96DD0 335 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CNBD2Q96M20 576 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 CCT8L2Q96SF2 557 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 KCNQ5Q9NR82 932 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 PDGFCQ9NRA1 345 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 WWOXQ9NZC7 414 aa11.11□□□□□ -0.63
ACTN1-216ENST00000556083 MSH4O15457 936 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 RASSF9O75901 435 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 TCF3P15923 654 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 CHRM3P20309 590 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 PSMA4P25789 261 aaKnown RBP11.1□□□□□ -0.63
ACTN1-216ENST00000556083 RRM2P31350 389 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 TRPC1P48995 793 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 PEX6Q13608 980 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 DENND1BQ6P3S1 775 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 PLD3Q8IV08 490 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 PHC3Q8NDX5 983 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 ATP8B4Q8TF62 1192 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 FAM162AQ96A26 154 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 REPS1Q96D71 796 aa11.1□□□□□ -0.63
ACTN1-216ENST00000556083 ATG4CQ96DT6 458 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms