RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 NRLP54845 237 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 CCDC142Q17RM4 750 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 ZNF658Q5TYW1 1059 aaPredicted RBP12.6□□□□□ -0.39
VRK1-204ENST00000555351 SDHAF4Q5VUM1 108 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 CC2D1AQ6P1N0 951 aaPredicted RBP12.6□□□□□ -0.39
VRK1-204ENST00000555351 ASCL5Q7RTU5 278 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 FAM186BQ8IYM0 893 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 CRYBG2Q8N1P7 616 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 TTC39CQ8N584 583 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 ZBTB44Q8NCP5 570 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 EXOC4Q96A65 974 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 B3GNT5Q9BYG0 378 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 DNAI2Q9GZS0 605 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 LMAN1LQ9HAT1 526 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 CYP3A43Q9HB55 503 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 GKN1Q9NS71 199 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 TRPM5Q9NZQ8 1165 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 NDRG2Q9UN36 371 aaKnown RBP12.6□□□□□ -0.39
VRK1-204ENST00000555351 ARHGAP26Q9UNA1 814 aa12.6□□□□□ -0.39
VRK1-204ENST00000555351 ANAPC1Q9H1A4 1944 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 F8VP50 259 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 HLA-DRAP01903 254 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 LMNAP02545 664 aaKnown RBP12.59□□□□□ -0.39
VRK1-204ENST00000555351 CKMP06732 381 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 PPP1R2P41236 205 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 PIK3CAP42336 1068 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 INCA1Q0VD86 236 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 USP4Q13107 963 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 PNOCQ13519 176 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 RUNX3Q13761 415 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 ZNF77Q15935 545 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 FOXR2Q6PJQ5 311 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 SPEM1Q8N4L4 309 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 PDZD8Q8NEN9 1154 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 SLITRK1Q96PX8 696 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 DPEP3Q9H4B8 488 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 SMYD3Q9H7B4 428 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 TMEM8AQ9HCN3 771 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 ZSCAN32Q9NX65 697 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 GTSE1Q9NYZ3 720 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 IL37Q9NZH6 218 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 CIZ1Q9ULV3 898 aaPredicted RBP12.59□□□□□ -0.39
VRK1-204ENST00000555351 MAPK8IP1Q9UQF2 711 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 CCL26Q9Y258 94 aa12.59□□□□□ -0.39
VRK1-204ENST00000555351 ZNF638Q14966 1978 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 FAM92AA1XBS5 289 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ZNF840PA6NDX5 716 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CETN3O15182 167 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SLC16A3O15427 465 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 KINO60870 393 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 OLFM2O95897 454 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 HDCP19113 662 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ASPAP45381 313 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CDH8P55286 799 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SLC7A9P82251 487 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CSTF1Q05048 431 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 LRRC63Q05C16 580 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 MTAPQ13126 283 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CCINQ13939 588 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 MTF1Q14872 753 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SNX30Q5VWJ9 437 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 KRT39Q6A163 491 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ZC3H3Q8IXZ2 948 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 NUP93Q8N1F7 819 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CPA6Q8N4T0 437 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 CCDC150Q8NCX0 1101 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 STKLD1Q8NE28 680 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 OSCP1Q8WVF1 389 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ATP2A3Q93084 1043 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SMARCE1Q969G3 411 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SMARCD1Q96GM5 515 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ZFYVE19Q96K21 471 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 TSG101Q99816 390 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 ZNF518BQ9C0D4 1074 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 SMG9Q9H0W8 520 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 CSNK1G1Q9HCP0 422 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 DMAP1Q9NPF5 467 aaPredicted RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 HPS4Q9NQG7 708 aa12.58□□□□□ -0.4
VRK1-204ENST00000555351 HELZP42694 1942 aaKnown RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 ZFHX2Q9C0A1 2572 aaPredicted RBP12.58□□□□□ -0.4
VRK1-204ENST00000555351 C2orf78A6NCI8 922 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 TRDMT1O14717 391 aaKnown RBP12.57□□□□□ -0.4
VRK1-204ENST00000555351 TNFRSF10BO14763 440 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 LILRB5O75023 590 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 EPB41P11171 864 aaKnown RBP12.57□□□□□ -0.4
VRK1-204ENST00000555351 TDGF1P13385 188 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 YWHAQP27348 245 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 HOXA6P31267 233 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 PRCPP42785 496 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 TUBP50607 506 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 NDST1P52848 882 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 USP46P62068 366 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 FKBP3Q00688 224 aaKnown RBP12.57□□□□□ -0.4
VRK1-204ENST00000555351 PPP3CAQ08209 521 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 NR1H3Q13133 447 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 PAQR9Q6ZVX9 377 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 FAM35AQ86V20 835 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 DDX42Q86XP3 938 aaKnown RBP eCLIP12.57□□□□□ -0.4
VRK1-204ENST00000555351 GPIHBP1Q8IV16 184 aa12.57□□□□□ -0.4
VRK1-204ENST00000555351 FUKQ8N0W3 1084 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms