RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF518BQ9C0D4 1074 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TMEM30AQ9NV96 361 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 COMMD8Q9NX08 183 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 IL37Q9NZH6 218 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 FBXO4Q9UKT5 387 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 MTF2Q9Y483 593 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 ANAPC1Q9H1A4 1944 aa17.07■□□□□ 0.32
CCDC88C-209ENST00000554872 TRAV19A0A0A6YYK7 116 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 OLFM2O95897 454 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 USP17L7P0C7H9 530 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 CTHP32929 405 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 GCLMP48507 274 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 USP4Q13107 963 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 PAQR9Q6ZVX9 377 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM35AQ86V20 835 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 TTC39CQ8N584 583 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM3CQ92520 227 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 SMARCD1Q96GM5 515 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 DHTKD1Q96HY7 919 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 NIF3L1Q9GZT8 377 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 CHRDQ9H2X0 955 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 SEMA4AQ9H3S1 761 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 APOBEC3GQ9HC16 384 aaKnown RBP17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 CSNK1G1Q9HCP0 422 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 DMAP1Q9NPF5 467 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 ARHGAP26Q9UNA1 814 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 CCL26Q9Y258 94 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 COQ4Q9Y3A0 265 aa17.06■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM92AA1XBS5 289 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 PSMA7O14818 248 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 LRRN2O75325 713 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 RTN3O95197 1032 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 TRIM21P19474 475 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 CD72P21854 359 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 CCNE1P24864 410 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 RAP1GAPP47736 663 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 MXI1P50539 228 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 NDST1P52848 882 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 CACNA2D1P54289 1103 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 USP46P62068 366 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 STIM1Q13586 685 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 ZNF77Q15935 545 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 SCARA5Q6ZMJ2 495 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 ALYREFQ86V81 257 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 MAML2Q8IZL2 1156 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 FUKQ8N0W3 1084 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 CCDC150Q8NCX0 1101 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 FBXL13Q8NEE6 735 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 PDZD8Q8NEN9 1154 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 PRMT8Q9NR22 394 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM86C1Q9NVL1 165 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 TRPM5Q9NZQ8 1165 aa17.05■□□□□ 0.32
CCDC88C-209ENST00000554872 ZNF840PA6NDX5 716 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SPECC1L-ADORA2AF8WAN1 911 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 TNFRSF10BO14763 440 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 PMS1P54277 932 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SLC7A9P82251 487 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 PDGFRLQ15198 375 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 ITPRIPL2Q3MIP1 535 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SNX30Q5VWJ9 437 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 ANKRD40Q6AI12 368 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SPOPLQ6IQ16 392 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 NUP93Q8N1F7 819 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 RIN3Q8TB24 985 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 NELL1Q92832 810 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 CEP63Q96MT8 703 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SLITRK1Q96PX8 696 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 DNAI2Q9GZS0 605 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 SMG9Q9H0W8 520 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 PNPLA8Q9NP80 782 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 CHMP5Q9NZZ3 219 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 MAN1B1Q9UKM7 699 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 FANCMQ8IYD8 2048 aa17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 ZNF638Q14966 1978 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 HELZP42694 1942 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-209ENST00000554872 DMDP11532 3685 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 CLDN5O00501 218 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 PMM2O15305 246 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 CILPO75339 1184 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 OAS1P00973 400 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 CKMP06732 381 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 SP9P0CG40 484 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 CHRNB1P11230 501 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 TUBP50607 506 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 UBE2HP62256 183 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 MORC3Q14149 939 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 MTF1Q14872 753 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 ZC3H14Q6PJT7 736 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 ACOT1Q86TX2 421 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 SYNPOQ8N3V7 929 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 ZFYVE19Q96K21 471 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 SLC22A12Q96S37 553 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 HNRNPABQ99729 332 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 DUSP9Q99956 384 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 NT5C1AQ9BXI3 368 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 METTL14Q9HCE5 456 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 HPS4Q9NQG7 708 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 RAB20Q9NX57 234 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 GTSE1Q9NYZ3 720 aa17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 HMGXB4Q9UGU5 601 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms