RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CGRRF1Q99675 332 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 C7orf25Q9BPX7 421 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 RNF38Q9H0F5 515 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 CUEDC2Q9H467 287 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 SMOC1Q9H4F8 434 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 SLC39A2Q9NP94 309 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 RXFP3Q9NSD7 469 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 SMPD4Q9NXE4 827 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 TRPM5Q9NZQ8 1165 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 NXF1Q9UBU9 619 aaKnown RBP12.25□□□□□ -0.45
NEK3-204ENST00000552973 INVSQ9Y283 1065 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 SPTBN4Q9H254 2564 aa12.25□□□□□ -0.45
NEK3-204ENST00000552973 A8MXQ7 604 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 LEFTY2O00292 366 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 CLDN5O00501 218 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 EIF3DO15371 548 aaKnown RBP eCLIP12.24□□□□□ -0.45
NEK3-204ENST00000552973 CLSTN1O94985 981 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 ANK1P16157 1881 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 PTPN1P18031 435 aaKnown RBP12.24□□□□□ -0.45
NEK3-204ENST00000552973 SEC13P55735 322 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 MYL6P60660 151 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 TNNC1P63316 161 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 CYP24A1Q07973 514 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 NR1H3Q13133 447 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 TRPC3Q13507 836 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 CUL4BQ13620 913 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 DMC1Q14565 340 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 PSMD6Q15008 389 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 MAPRE1Q15691 268 aaKnown RBP12.24□□□□□ -0.45
NEK3-204ENST00000552973 FBXO43Q4G163 708 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 PPM1JQ5JR12 505 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 UNC13DQ70J99 1090 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 GRAMD1CQ8IYS0 662 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 XXYLT1Q8NBI6 393 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 ATP2A3Q93084 1043 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 ZNF518BQ9C0D4 1074 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 ARHGAP26Q9UNA1 814 aa12.24□□□□□ -0.45
NEK3-204ENST00000552973 CCDC163A0A0D9SF12 145 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 ZNF840PA6NDX5 716 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 TRIM66O15016 1216 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 EXOC3O60645 756 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 PHACTR2O75167 634 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 TACC1O75410 805 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 EPN2O95208 641 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 YEATS4O95619 227 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 CDH8P55286 799 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 TAF10Q12962 218 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 C2orf27AQ580R0 203 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 CAMKK1Q8N5S9 505 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 C12orf50Q8NA57 414 aaPredicted RBP12.23□□□□□ -0.45
NEK3-204ENST00000552973 SPRYD3Q8NCJ5 442 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 PLEKHO2Q8TD55 490 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 EXOC4Q96A65 974 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 C8orf48Q96LL4 319 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 B3GNT5Q9BYG0 378 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 GZF1Q9H116 711 aaPredicted RBP12.23□□□□□ -0.45
NEK3-204ENST00000552973 TMEM30AQ9NV96 361 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 PCDHA7Q9UN72 937 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 CPQQ9Y646 472 aa12.23□□□□□ -0.45
NEK3-204ENST00000552973 DNAH14Q0VDD8 3507 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 NFATC1O95644 943 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 ADRB1P08588 477 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 ZNF806P0C7X5 589 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 OPRD1P41143 372 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 RAP1GAPP47736 663 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 SLC6A11P48066 632 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 ME1P48163 572 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 DGKEP52429 567 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 EHHADHQ08426 723 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 BIRC3Q13489 604 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 KNOP1Q1ED39 458 aaKnown RBP12.22□□□□□ -0.45
NEK3-204ENST00000552973 PLK5Q496M5 336 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 TDRD10Q5VZ19 366 aaKnown RBP12.22□□□□□ -0.45
NEK3-204ENST00000552973 IL31Q6EBC2 164 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 TCEAL6Q6IPX3 200 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 CNNM4Q6P4Q7 775 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 SYT13Q7L8C5 426 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 FILIP1Q7Z7B0 1213 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 TTC30AQ86WT1 665 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 CCDC33Q8N5R6 958 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 TCEAL3Q969E4 200 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 LOXL4Q96JB6 756 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 KCNK16Q96T55 309 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 TPSD1Q9BZJ3 242 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 SMYD3Q9H7B4 428 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 FAM13BQ9NYF5 915 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 CHORDC1Q9UHD1 332 aaPredicted RBP12.22□□□□□ -0.45
NEK3-204ENST00000552973 SERTAD1Q9UHV2 236 aa12.22□□□□□ -0.45
NEK3-204ENST00000552973 NUP210Q8TEM1 1887 aaPredicted RBP12.22□□□□□ -0.45
NEK3-204ENST00000552973 K7EQS6 105 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 APBB3O95704 486 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 F13A1P00488 732 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 CYP17A1P05093 508 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 ZSCAN22P10073 491 aaPredicted RBP12.21□□□□□ -0.45
NEK3-204ENST00000552973 MBL2P11226 248 aaPredicted RBP12.21□□□□□ -0.45
NEK3-204ENST00000552973 TCF3P15923 654 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 GBP1P32455 592 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 MPLP40238 635 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 PDE6CP51160 858 aa12.21□□□□□ -0.45
NEK3-204ENST00000552973 NOP14P78316 857 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms