RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SECISBP2LQ93073 1101 aaKnown RBP22.41■■□□□ 1.18
VPS29-206ENST00000549578 C8orf48Q96LL4 319 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 DNAJC7Q99615 494 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 ABHD10Q9NUJ1 306 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 PCDHGC3Q9UN70 934 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 XIRP2A4UGR9 3374 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 CHRNB2P17787 502 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 HOXA9P31269 272 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 EPHB3P54753 998 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 CDR2Q01850 454 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 KLHL30Q0D2K2 578 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 PLD1Q13393 1074 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 MTMR3Q13615 1198 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 CNGA4Q8IV77 575 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 ZNF707Q96C28 371 aaPredicted RBP22.41■■□□□ 1.18
VPS29-206ENST00000549578 PRKD2Q9BZL6 878 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 PDCL3Q9H2J4 239 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 HAUS4Q9H6D7 363 aa22.41■■□□□ 1.18
VPS29-206ENST00000549578 FAM170AA1A519 330 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 HNRNPA1P09651 372 aaKnown RBP eCLIP22.4■■□□□ 1.18
VPS29-206ENST00000549578 SETSIPP0DME0 302 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 PRKCIP41743 596 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 SLC8A3P57103 927 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 FMO1Q01740 532 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 ARID5BQ14865 1188 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 VEPH1Q14D04 833 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 HGSNATQ68CP4 663 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 GPRIN1Q7Z2K8 1008 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 ZNF677Q86XU0 584 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 TC2NQ8N9U0 490 aa22.4■■□□□ 1.18
VPS29-206ENST00000549578 MAFAQ8NHW3 353 aaPredicted RBP22.4■■□□□ 1.18
VPS29-206ENST00000549578 HHLA1C9JL84 531 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 XPO1O14980 1071 aaKnown RBP22.39■■□□□ 1.17
VPS29-206ENST00000549578 HOXB8P17481 243 aaPredicted RBP22.39■■□□□ 1.17
VPS29-206ENST00000549578 HNRNPH3P31942 346 aaKnown RBP22.39■■□□□ 1.17
VPS29-206ENST00000549578 GPD2P43304 727 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 CLUL1Q15846 466 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 MEA1Q16626 185 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 ZNF571Q7Z3V5 609 aaPredicted RBP22.39■■□□□ 1.17
VPS29-206ENST00000549578 PIGZQ86VD9 579 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 SPATA17Q96L03 361 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 AGPAT1Q99943 283 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 UBE2ZQ9H832 354 aaPredicted RBP22.39■■□□□ 1.17
VPS29-206ENST00000549578 CDH22Q9UJ99 828 aa22.39■■□□□ 1.17
VPS29-206ENST00000549578 PATJQ8NI35 1801 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 SLC38A8A6NNN8 435 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 PLEKP08567 350 aaPredicted RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 RGS7P49802 495 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 TDRD12Q587J7 1177 aaKnown RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 PMF1Q6P1K2 205 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 WDR59Q6PJI9 974 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 WDTC1Q8N5D0 677 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 C1orf131Q8NDD1 294 aaKnown RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 CMASQ8NFW8 434 aaPredicted RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 OLIG1Q8TAK6 271 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 SLC35F5Q8WV83 523 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 SMG7Q92540 1137 aaKnown RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 MSLNLQ96KJ4 702 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 SYT11Q9BT88 431 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 SEPT11Q9NVA2 429 aaKnown RBP22.38■■□□□ 1.17
VPS29-206ENST00000549578 HCFC1R1Q9NWW0 138 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 CYTH4Q9UIA0 394 aa22.38■■□□□ 1.17
VPS29-206ENST00000549578 H3BQ06 376 aaPredicted RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 TNFRSF10BO14763 440 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 XYLBO75191 536 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 SERPING1P05155 500 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 KCNA5P22460 613 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 PLA2G4AP47712 749 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 SLC5A3P53794 718 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 USP46P62068 366 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 IFRD2Q12894 506 aaPredicted RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 TSR1Q2NL82 804 aaKnown RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 DENND5BQ6ZUT9 1274 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 DNAJB7Q7Z6W7 309 aaPredicted RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 NUP93Q8N1F7 819 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 ELMOD1Q8N336 334 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 SCAMP5Q8TAC9 235 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 PSMG2Q969U7 264 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 ZNF512Q96ME7 567 aaPredicted RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 PCDHB18PQ96TA0 734 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 LHX5Q9H2C1 402 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 PNPLA8Q9NP80 782 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 IMPACTQ9P2X3 320 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 MAGED2Q9UNF1 606 aaPredicted RBP22.37■■□□□ 1.17
VPS29-206ENST00000549578 CEP83Q9Y592 693 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 GREB1Q4ZG55 1949 aa22.37■■□□□ 1.17
VPS29-206ENST00000549578 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 PAPLNO95428 1278 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 CSH1P0DML2 217 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 CSH2P0DML3 217 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 HMGA1P17096 107 aaKnown RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 TAF12Q16514 161 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 ITIH5Q86UX2 942 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 HS6ST3Q8IZP7 471 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 CEP295NLQ96MC4 621 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 CORO1BQ9BR76 489 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 S1PR5Q9H228 398 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 PIDD1Q9HB75 910 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 ZNHIT6Q9NWK9 470 aaKnown RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 ARHGAP20Q9P2F6 1191 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms