RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 USP28Q96RU2 1077 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 TTLL2Q9BWV7 592 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 DUSP15Q9H1R2 295 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 CRTAC1Q9NQ79 661 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 KBTBD4Q9NVX7 518 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 TRPM5Q9NZQ8 1165 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 PLXND1Q9Y4D7 1925 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 HCRTO43612 131 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 ATP2C2O75185 946 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 TACC1O75410 805 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 BDNFP23560 247 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 LMO2P25791 158 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 ANXA13P27216 316 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 GRIK1P39086 918 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 NASPP49321 788 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-218ENST00000548945 SNRPFP62306 86 aaKnown RBP13.73□□□□□ -0.21
PTCH1-218ENST00000548945 SLC7A9P82251 487 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 LMBRD2Q68DH5 695 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-218ENST00000548945 NAIF1Q69YI7 327 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-218ENST00000548945 FAM173BQ6P4H8 233 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 CNNM4Q6P4Q7 775 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 CBWD2Q8IUF1 395 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 MYCBPAPQ8TBZ2 947 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 MYLPFQ96A32 169 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 C8orf48Q96LL4 319 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 PANK2Q9BZ23 570 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 HSPBP1Q9NZL4 362 aa13.73□□□□□ -0.21
PTCH1-218ENST00000548945 ZZEF1O43149 2961 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 FAM208BQ5VWN6 2430 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 HOXD13P35453 343 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 PSMC1P62191 440 aaKnown RBP13.72□□□□□ -0.21
PTCH1-218ENST00000548945 SHC2P98077 582 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 AMPD3Q01432 767 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 CCDC6Q16204 474 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 E2F4Q16254 413 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 ST3GAL2Q16842 350 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 EPM2AIP1Q7L775 607 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-218ENST00000548945 TRAPPC11Q7Z392 1133 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 PDILTQ8N807 584 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 ZNF507Q8TCN5 953 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 USP33Q8TEY7 942 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 PCED1BQ96HM7 432 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 LSM14BQ9BX40 385 aaKnown RBP13.72□□□□□ -0.21
PTCH1-218ENST00000548945 TRIM9Q9C026 710 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 LINC00597Q9H2U6 94 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 RXFP3Q9NSD7 469 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 POLR3BQ9NW08 1133 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-218ENST00000548945 ANGPTL2Q9UKU9 493 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 MTMR6Q9Y217 621 aa13.72□□□□□ -0.21
PTCH1-218ENST00000548945 ASCC3Q8N3C0 2202 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 UBE4BO95155 1302 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 MYH10P35580 1976 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 BCLAF3A2AJT9 711 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 ZNF840PA6NDX5 716 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 LEFTY2O00292 366 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 SLC9A3R1O14745 358 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 KRT37O76014 449 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 STAU1O95793 577 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 OLFM2O95897 454 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 PDGFRBP09619 1106 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 PMLP29590 882 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 GNL1P36915 607 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 OPRD1P41143 372 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 EIF2DP41214 584 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 USP46P62068 366 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 ZXDBP98169 803 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 CYP27A1Q02318 531 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 PSMD2Q13200 908 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 SNRNP35Q16560 246 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 USP39Q53GS9 565 aaKnown RBP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 RASSF3Q86WH2 238 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 DDX42Q86XP3 938 aaKnown RBP eCLIP13.71□□□□□ -0.21
PTCH1-218ENST00000548945 LINC00301Q8NCQ3 95 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 GLIS3Q8NEA6 775 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 TTC16Q8NEE8 873 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 TSTD1Q8NFU3 115 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 MMS19Q96T76 1030 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 ELOVL4Q9GZR5 314 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 SNX25Q9H3E2 840 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 IGF2RP11717 2491 aa13.71□□□□□ -0.21
PTCH1-218ENST00000548945 PCNX2A6NKB5 2137 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 F8VP50 259 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 K7EQS6 105 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 PPP6R2O75170 966 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 OAS1P00973 400 aaKnown RBP13.7□□□□□ -0.22
PTCH1-218ENST00000548945 CYP17A1P05093 508 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 DGKEP52429 567 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 MRPS21P82921 87 aaKnown RBP13.7□□□□□ -0.22
PTCH1-218ENST00000548945 CREB5Q02930 508 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 PSMD6Q15008 389 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 STK38Q15208 465 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 GAB4Q2WGN9 574 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 HSF5Q4G112 596 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-218ENST00000548945 MDH1BQ5I0G3 518 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 N4BP2L1Q5TBK1 243 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-218ENST00000548945 PMS2CLQ68D20 193 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 RNF43Q68DV7 783 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 ADGRG2Q8IZP9 1017 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 IQUBQ8NA54 791 aa13.7□□□□□ -0.22
PTCH1-218ENST00000548945 CNOT6LQ96LI5 555 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms