RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CLCN1P35523 988 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 SOX5P35711 763 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 PPP3CCP48454 512 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 GPR15P49685 360 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 BCAT1P54687 386 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 EPHA5P54756 1037 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 BST2Q10589 180 aaKnown RBP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 FIGNQ5HY92 759 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 SARM1Q6SZW1 724 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 OTOP3Q7RTS5 596 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 TFAP2BQ92481 460 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 ACSF2Q96CM8 615 aaPredicted RBP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 TRMT2BQ96GJ1 504 aaKnown RBP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 MYRFLQ96LU7 910 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 SMOQ99835 787 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 PDCL3Q9H2J4 239 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 FBXO44Q9H4M3 255 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 POMKQ9H5K3 350 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 HCFC1R1Q9NWW0 138 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 PRKAG3Q9UGI9 489 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 AJAP1Q9UKB5 411 aaPredicted RBP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 MRPS23Q9Y3D9 190 aaKnown RBP14.56□□□□□ -0.08
PTCH1-213ENST00000546820 CLUHO75153 1309 aa14.56□□□□□ -0.08
PTCH1-213ENST00000546820 BRWD1Q9NSI6 2320 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 EPHB6O15197 1021 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 BEST1O76090 585 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 GFPT2O94808 682 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 TPM1P09493 284 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 YWHAQP27348 245 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 PBX1P40424 430 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 PDE6CP51160 858 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 CACNA2D1P54289 1103 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 JAM2P57087 298 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 MEA1Q16626 185 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 ARHGAP15Q53QZ3 475 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 CLEC20AQ6ZU45 233 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.55□□□□□ -0.08
PTCH1-213ENST00000546820 HS6ST3Q8IZP7 471 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 PLCD3Q8N3E9 789 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 UBA3Q8TBC4 463 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 SLITRK1Q96PX8 696 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 GPR88Q9GZN0 384 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 NUCKS1Q9H1E3 243 aaKnown RBP14.55□□□□□ -0.08
PTCH1-213ENST00000546820 USTQ9Y2C2 406 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 CEP83Q9Y592 693 aa14.55□□□□□ -0.08
PTCH1-213ENST00000546820 ZFP37Q9Y6Q3 630 aaPredicted RBP14.55□□□□□ -0.08
PTCH1-213ENST00000546820 M0QYV0 167 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 XPO1O14980 1071 aaKnown RBP14.54□□□□□ -0.08
PTCH1-213ENST00000546820 CYP11B1P15538 503 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 FERP16591 822 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 HMGA1P17096 107 aaKnown RBP14.54□□□□□ -0.08
PTCH1-213ENST00000546820 GABRR2P28476 465 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 GBP2P32456 591 aaPredicted RBP14.54□□□□□ -0.08
PTCH1-213ENST00000546820 KCNQ1P51787 676 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 SNX16P57768 344 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 NTHL1P78549 312 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 PDE4CQ08493 712 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 MTMR3Q13615 1198 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 SPECC1LQ69YQ0 1117 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 SLC47A2Q86VL8 602 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 ZNF677Q86XU0 584 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 ZMIZ2Q8NF64 920 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 LRRC3Q9BY71 257 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 ATXN3LQ9H3M9 355 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 LRRC4Q9HBW1 653 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 TMEM30AQ9NV96 361 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 GDE1Q9NZC3 331 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 ZMYM5Q9UJ78 669 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 ITIH6Q6UXX5 1313 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 MYH10P35580 1976 aa14.54□□□□□ -0.08
PTCH1-213ENST00000546820 PTPRDP23468 1912 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 A0A1W2PQJ5 194 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 SOBPA7XYQ1 873 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 TNFRSF10BO14763 440 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 CALCAP01258 141 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 PNMA6AP0CW24 399 aaPredicted RBP14.53□□□□□ -0.08
PTCH1-213ENST00000546820 BMP1P13497 986 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 IL9P15248 144 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 ACADSBP45954 432 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 SLC5A3P53794 718 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 ARID5AQ03989 594 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 IFRD2Q12894 506 aaPredicted RBP14.53□□□□□ -0.08
PTCH1-213ENST00000546820 TRIM14Q14142 442 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 PTPN21Q16825 1174 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 PKDCCQ504Y2 493 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 TJAP1Q5JTD0 557 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 SFMBT2Q5VUG0 894 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 PIGZQ86VD9 579 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 TTC30AQ86WT1 665 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 TMC8Q8IU68 726 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 PDZD8Q8NEN9 1154 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 SLC35F5Q8WV83 523 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 KCTD13Q8WZ19 329 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 OVCA2Q8WZ82 227 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 MRPS31Q92665 395 aaKnown RBP14.53□□□□□ -0.08
PTCH1-213ENST00000546820 FBXO32Q969P5 355 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 RPGRIP1Q96KN7 1286 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 HSFY1Q96LI6 401 aa14.53□□□□□ -0.08
PTCH1-213ENST00000546820 NOX5Q96PH1 765 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms