RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 OLFML1Q6UWY5 402 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 SYNE4Q8N205 404 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 SPDYE2BA6NHP3 402 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 SPDYE6P0CI01 402 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 ACAT1P24752 427 aaKnown RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 TKTP29401 623 aaKnown RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 HK2P52789 917 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 NCALDP61601 193 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 PTK6Q13882 451 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 CCDC153Q494R4 210 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 DHDDSQ86SQ9 333 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 LINC00523Q86TU6 105 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 RTKN2Q8IZC4 609 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 DEFB107AQ8IZN7 70 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 TAGAPQ8N103 731 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 CCDC24Q8N4L8 307 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 HDAC7Q8WUI4 952 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 EPAS1Q99814 870 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 DHX35Q9H5Z1 703 aaKnown RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 GALNT8Q9NY28 637 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 SUGT1Q9Y2Z0 365 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 SALL1Q9NSC2 1324 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 PHLPP1O60346 1717 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 SNTNA6NMZ2 147 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 DNALI1O14645 258 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 RALBP11234 206 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 OTUD4Q01804 1114 aaKnown RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 PRKAA1Q13131 559 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 TIMM50Q3ZCQ8 353 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 PDPK2PQ6A1A2 396 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 SH3RF1Q7Z6J0 888 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 CAMK1DQ8IU85 385 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 EXT2Q93063 718 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 VCPIP1Q96JH7 1222 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 DDX18Q9NVP1 670 aaKnown RBP13.27□□□□□ -0.29
PTCH1-212ENST00000546744 ENOPH1Q9UHY7 261 aa13.27□□□□□ -0.29
PTCH1-212ENST00000546744 VAV1P15498 845 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 GJA8P48165 433 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 SAMD4BQ5PRF9 694 aaKnown RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 NAPEPLDQ6IQ20 393 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 PARD3BQ8TEW8 1205 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 VPS33AQ96AX1 596 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 ECSITQ9BQ95 431 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 TMEM109Q9BVC6 243 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 BBS2Q9BXC9 721 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 EURLQ9NYK6 297 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 FAM205CA6NFA0 338 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CLOCKO15516 846 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 PROSCO94903 275 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 PAEPP09466 180 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CCDC130P13994 396 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 NCKAP1LP55160 1127 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 SESN2P58004 480 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 ACVR2BQ13705 512 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 LAMC2Q13753 1193 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 ATAD3BQ5T9A4 648 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 MFSD5Q6N075 450 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 SCARA5Q6ZMJ2 495 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 NT5DC3Q86UY8 548 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 DNAJC16Q9Y2G8 782 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 PDZK1P1A8MUH7 402 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 EVPLLA8MZ36 301 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 DGAT1O75907 488 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CYP2C8P10632 490 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CDH3P22223 829 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 HSD17B4P51659 736 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 PDK3Q15120 406 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 QRICH1Q2TAL8 776 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 SUSD4Q5VX71 490 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF772Q68DY9 489 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 RBM46Q8TBY0 533 aaKnown RBP13.26□□□□□ -0.29
PTCH1-212ENST00000546744 GLMNQ92990 594 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CNKSR1Q969H4 720 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 NCKIPSDQ9NZQ3 722 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 TPRKBQ9Y3C4 175 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 CACNA1FO60840 1977 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 COL15A1P39059 1388 aa13.26□□□□□ -0.29
PTCH1-212ENST00000546744 C1orf232A0A0U1RR37 186 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TMEM191CA6NGB0 347 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ITPK1Q13572 414 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 SNRNP35Q16560 246 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 LIN52Q52LA3 116 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ARMC4Q5T2S8 1044 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 FBXO36Q8NEA4 188 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF507Q8TCN5 953 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZFAND2BQ8WV99 257 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZFYVE19Q96K21 471 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PTTG2Q9NZH5 202 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 UBA2Q9UBT2 640 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 NOD1Q9Y239 953 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 VPS9D1Q9Y2B5 631 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PARP4Q9UKK3 1724 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 H0YIN7 160 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TRDMT1O14717 391 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 RAG1P15918 1043 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF23P17027 643 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 SERPINH1P50454 418 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ERFP50548 548 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms