RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 CCNJLQ8IV13 435 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 TRIM59Q8IWR1 403 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 CACTINQ8WUQ7 758 aaKnown RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 ARNTL2Q8WYA1 636 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 RABGGTAQ92696 567 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 SLC35C1Q96A29 364 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 ALKBH8Q96BT7 664 aaKnown RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 BORCS6Q96GS4 357 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 IGSF21Q96ID5 467 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 DMRTB1Q96MA1 342 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 ZNF560Q96MR9 790 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 SRRTQ9BXP5 876 aaKnown RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 CEP41Q9BYV8 373 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 TTYH1Q9H313 450 aaPredicted RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 ZNF576Q9H609 170 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 MMRN2Q9H8L6 949 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 CERS4Q9HA82 394 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 METTL14Q9HCE5 456 aaKnown RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 DPP3Q9NY33 737 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 SPG21Q9NZD8 308 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 MAGEC2Q9UBF1 373 aaPredicted RBP6.81□□□□□ -1.32
PRKDC-211ENST00000546304 SIX4Q9UIU6 781 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 ADAM28Q9UKQ2 775 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 PTPRDP23468 1912 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 PLXNA3P51805 1871 aa6.81□□□□□ -1.32
PRKDC-211ENST00000546304 C5orf42Q9H799 3197 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 ANO9A1A5B4 782 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 KCNJ18B7U540 433 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 NT5C1B-RDH14C9J2C7 533 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 DDX3YO15523 660 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 STX10O60499 249 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 N4BP1O75113 896 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CPNE3O75131 537 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CLSTN1O94985 981 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CSPG5O95196 566 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 RB1P06400 928 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 KRT19P08727 400 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 EEF1GP26641 437 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 GTF2H1P32780 548 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 PNPLA4P41247 253 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 MTIF2P46199 727 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 GCLMP48507 274 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 AARSP49588 968 aaKnown RBP eCLIP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 PPP3CAQ08209 521 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 ORC1Q13415 861 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 KCNJ12Q14500 433 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 NCAPHQ15003 741 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 UVSSAQ2YD98 709 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 ZNF699Q32M78 642 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 ZACNQ401N2 412 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 SV2CQ496J9 727 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CBWD6Q4V339 395 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CBWD3Q5JTY5 395 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CBWD5Q5RIA9 395 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 KIAA0319Q5VV43 1072 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 FUT10Q6P4F1 479 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 C15orf39Q6ZRI6 1047 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 TRAPPC11Q7Z392 1133 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 IRF2BP1Q8IU81 584 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 DHX40Q8IX18 779 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 RNF168Q8IYW5 571 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 LRRC52Q8N7C0 313 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CXorf38Q8TB03 319 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 UBASH3BQ8TF42 649 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 UBL7Q96S82 380 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 TCF12Q99081 682 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 COLEC11Q9BWP8 271 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 VN1R3Q9BXE9 311 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 TSPY26PQ9H489 355 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 CBX8Q9HC52 389 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 TMEM8AQ9HCN3 771 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 SAMSN1Q9NSI8 373 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 FAN1Q9Y2M0 1017 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 R3HCC1Q9Y3T6 440 aaKnown RBP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 NUB1Q9Y5A7 615 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.8□□□□□ -1.32
PRKDC-211ENST00000546304 UNC80Q8N2C7 3258 aa6.8□□□□□ -1.32
PRKDC-211ENST00000546304 MYH10P35580 1976 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 BECN2A8MW95 431 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 H3BNC9 293 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 PIRO00625 290 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 TADA2AO75478 443 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 VNN1O95497 513 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 HLA-DRAP01903 254 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 AFPP02771 609 aaKnown RBP6.79□□□□□ -1.32
PRKDC-211ENST00000546304 SOD2P04179 222 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 ALDH2P05091 517 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 URODP06132 367 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 ESRRAP11474 423 aaPredicted RBP6.79□□□□□ -1.32
PRKDC-211ENST00000546304 ODC1P11926 461 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 ZNF18P17022 549 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 BRCC3P46736 316 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 FMO5P49326 533 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 GLUD2P49448 558 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 TAF6P49848 677 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 FXR1P51114 621 aaKnown RBP eCLIP6.79□□□□□ -1.325e-9■■□□□ 13.7
PRKDC-211ENST00000546304 NOP14P78316 857 aaKnown RBP6.79□□□□□ -1.32
PRKDC-211ENST00000546304 RBP5P82980 135 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 PLCB3Q01970 1234 aa6.79□□□□□ -1.32
PRKDC-211ENST00000546304 KRT17Q04695 432 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms