RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ZC2HC1CQ53FD0 456 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 RPS26P11Q5JNZ5 115 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 FAM26FQ5R3K3 315 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 NT5DC1Q5TFE4 455 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SLC27A1Q6PCB7 646 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SPATS2Q86XZ4 545 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ECHDC2Q86YB7 292 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 HERC6Q8IVU3 1022 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 HACE1Q8IYU2 909 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SNRNP27Q8WVK2 155 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 DDX1Q92499 740 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 HPS3Q969F9 1004 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SMARCE1Q969G3 411 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TOP1MTQ969P6 601 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ZNF669Q96BR6 464 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 HVCN1Q96D96 273 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ACCSQ96QU6 501 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 FIZ1Q96SL8 496 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ACO2Q99798 780 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 NAA15Q9BXJ9 866 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PDZD7Q9H5P4 517 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ELAC1Q9H777 363 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SLC39A2Q9NP94 309 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 FAM105AQ9NUU6 356 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 RMND1Q9NWS8 449 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PPM1HQ9ULR3 514 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TNFSF13BQ9Y275 285 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PCDHB2Q9Y5E7 798 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 A0A0A0MRY4 1105 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 GRXCR1A8MXD5 290 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 FSCN2O14926 492 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PLD2O14939 933 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 HNRNPDLO14979 420 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 KLRC4O43908 158 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TOM1L1O75674 476 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PRPF6O94906 941 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 KIF20AO95235 890 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 EOMESO95936 686 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 MBD3O95983 291 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ITGB2P05107 769 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ITGA4P13612 1032 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 CPEP16870 476 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 RAC1P63000 192 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 KCNB1Q14721 858 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 CAMK4Q16566 473 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ZNF568Q3ZCX4 644 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 UBXN11Q5T124 520 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ZPBP2Q6X784 338 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 C1orf122Q6ZSJ8 110 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TMCO2Q7Z6W1 182 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 CDR2LQ86X02 465 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 MAP4K3Q8IVH8 894 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ABI1Q8IZP0 508 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 CBARPQ8N350 705 aaPredicted RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 OR6P1Q8NGX9 317 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 KCNN1Q92952 543 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 GSDMAQ96QA5 445 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 YME1L1Q96TA2 773 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 RAD9AQ99638 391 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 EIF2AQ9BY44 585 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 LRRC3Q9BY71 257 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TMEM206Q9H813 350 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 NLRC4Q9NPP4 1024 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 CRTAC1Q9NQ79 661 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 TMEM161AQ9NX61 479 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 NOP53Q9NZM5 478 aaKnown RBP5.52□□□□□ -1.53
CLIP1-217ENST00000543205 ANKFY1Q9P2R3 1169 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 MSRAQ9UJ68 235 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 PCDHA5Q9Y5H7 936 aa5.52□□□□□ -1.53
CLIP1-217ENST00000543205 SIP14410 1827 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 TBKBP1A7MCY6 615 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 FAM229AH3BQW9 127 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 NEMP1O14524 444 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 EIF3DO15371 548 aaKnown RBP eCLIP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 CLDN3O15551 220 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 ZNF623O75123 536 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 DNAJC8O75937 253 aaPredicted RBP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 FBXO21O94952 628 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 GJB5O95377 273 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 EDN1P05305 212 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 ASGR2P07307 311 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 MCF2P10911 925 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 HARSP12081 509 aaKnown RBP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 CASP5P51878 434 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 RABGGTBP53611 331 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 SMAD3P84022 425 aaKnown RBP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 STK4Q13043 487 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 ZNF460Q14592 562 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 RAB30Q15771 203 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 LONRF2Q1L5Z9 754 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 ZNF423Q2M1K9 1284 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 LRIT3Q3SXY7 679 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 ARHGAP29Q52LW3 1261 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 CCDC92Q53HC0 331 aaPredicted RBP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 PRRT3Q5FWE3 981 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 EEF1DP3Q658K8 133 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 HGSNATQ68CP4 663 aa5.51□□□□□ -1.53
CLIP1-217ENST00000543205 FAM109BQ6ICB4 259 aaPredicted RBP5.51□□□□□ -1.53
CLIP1-217ENST00000543205 SLFN12LQ6IEE8 588 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms