RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MMP13P45452 471 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 CDR1P51861 262 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 ZNF143P52747 638 aaPredicted RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 GDF10P55107 478 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 MMRN1Q13201 1228 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 SOWAHAQ2M3V2 549 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 C9orf57Q5W0N0 161 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 CROCCP2Q86T23 111 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 SLC35B2Q8TB61 432 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 CFAP57Q96MR6 1250 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 GOLGA2P5Q9HBQ8 144 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 SAYSD1Q9NPB0 183 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 ASNSD1Q9NWL6 643 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 RALGAPA2Q2PPJ7 1873 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 MYO1CO00159 1063 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 TRIM66O15016 1216 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 PECAM1P16284 738 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 CDC42EP1Q00587 391 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 FAM182AQ5T1J6 154 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 SMYD5Q6GMV2 418 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 ALKAL1Q6UXT8 129 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 ZCCHC9Q8N567 271 aaKnown RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 B3GNT5Q9BYG0 378 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 ROPN1BQ9BZX4 212 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 ROPN1Q9HAT0 212 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 TBK1Q9UHD2 729 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 TPX2Q9ULW0 747 aaKnown RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 DERAQ9Y315 318 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 C2CD4BA6NLJ0 364 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 GOLGA8MH3BSY2 632 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 MAGEA4P43358 317 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 BBS12Q6ZW61 710 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 EXOC3L1Q86VI1 746 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 TTC39CQ8N584 583 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 CMASQ8NFW8 434 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-204ENST00000543140 CNPY3Q9BT09 278 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 MIS12Q9H081 205 aa17.12■□□□□ 0.33
COL4A1-204ENST00000543140 SMIM28A0A1B0GU29 152 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 A8MXQ7 604 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 CREB1P16220 341 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 ADAM17P78536 824 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 FASTKD3Q14CZ7 662 aaKnown RBP17.11■□□□□ 0.33
COL4A1-204ENST00000543140 MFSD5Q6N075 450 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 SCYL2Q6P3W7 929 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 CAPN12Q6ZSI9 719 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 CCHCR1Q8TD31 782 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 XPO6Q96QU8 1125 aaKnown RBP17.11■□□□□ 0.33
COL4A1-204ENST00000543140 AP5M1Q9H0R1 490 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 STMN4Q9H169 189 aaPredicted RBP17.11■□□□□ 0.33
COL4A1-204ENST00000543140 CNTN3Q9P232 1028 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.11■□□□□ 0.33
COL4A1-204ENST00000543140 FAM169AQ9Y6X4 670 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 CDH6P55285 790 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 QPCTQ16769 361 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 TNFAIP8L3Q5GJ75 292 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 ZNF618Q5T7W0 954 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 C10orf67Q8IYJ2 551 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 NGRNQ9NPE2 291 aaKnown RBP17.11■□□□□ 0.33
COL4A1-204ENST00000543140 ZNF236Q9UL36 1845 aa17.11■□□□□ 0.33
COL4A1-204ENST00000543140 SPTLC1O15269 473 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 GABBR2O75899 941 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 CCDC130P13994 396 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 LMO2P25791 158 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 ADORA2BP29275 332 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 CPT1AP50416 773 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 NRLP54845 237 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 NPNTQ6UXI9 565 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 ARHGEF2Q92974 986 aaKnown RBP17.1■□□□□ 0.33
COL4A1-204ENST00000543140 SERPINB12Q96P63 405 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 GPATCH2LQ9NWQ4 482 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 HESX1Q9UBX0 185 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 EFR3BQ9Y2G0 817 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 BANF1O75531 89 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 GAD2Q05329 585 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 MTM1Q13496 603 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 ACAP1Q15027 740 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 TAZQ16635 292 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 CCDC14Q49A88 953 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 PKDCCQ504Y2 493 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 FBXO47Q5MNV8 452 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 ERMARDQ5T6L9 678 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 RNASEH2BQ5TBB1 312 aaKnown RBP17.1■□□□□ 0.33
COL4A1-204ENST00000543140 CYP4V2Q6ZWL3 525 aaPredicted RBP17.1■□□□□ 0.33
COL4A1-204ENST00000543140 RASAL3Q86YV0 1011 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 UNC45BQ8IWX7 931 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 CYP4X1Q8N118 509 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 LRRC52Q8N7C0 313 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 RSAD2Q8WXG1 361 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 PCDH9Q9HC56 1237 aa17.1■□□□□ 0.33
COL4A1-204ENST00000543140 UBQLN1Q9UMX0 589 aaKnown RBP17.1■□□□□ 0.33
COL4A1-204ENST00000543140 HAS3O00219 553 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 PRPSAP2O60256 369 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 FGFR1P11362 822 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 PCK1P35558 622 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 IFNAR2P48551 515 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 SOX4Q06945 474 aaPredicted RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 OLFML1Q6UWY5 402 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 SLC35F5Q8WV83 523 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 MAK16Q9BXY0 300 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms