RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 NMRK1Q9NWW6 199 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ABI2Q9NYB9 513 aaPredicted RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 SPEF1Q9Y4P9 236 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 INO80B-WBP1J3KQ70 363 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 PEX10O60683 326 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ARHGEF15O94989 841 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 FKBP9O95302 570 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ZBTB11O95625 1053 aaPredicted RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 PABPC4LP0CB38 370 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 RARAP10276 462 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 EPHX2P34913 555 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 CASP4P49662 377 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 CDK7P50613 346 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 BLVRAP53004 296 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 PTPN5P54829 565 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 PPP2R2BQ00005 443 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 SUPT20HL1Q3ZLR7 823 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 WDR44Q5JSH3 913 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 DNAAF5Q86Y56 855 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ANKRD13CQ8N6S4 541 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.6□□□□□ -0.55
CDH3-203ENST00000542274 XPO6Q96QU8 1125 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 SMARCAD1Q9H4L7 1026 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 SIAEQ9HAT2 523 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 RLFQ13129 1914 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 TMEM150BA6NC51 233 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 EXTL3O43909 919 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 TLR2O60603 784 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CNOT3O75175 753 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 PSMD10O75832 226 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ATP1A1P05023 1023 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 ACTN1P12814 892 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ITGB5P18084 799 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 NR2F2P24468 414 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 NMT1P30419 496 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 MYL6P60660 151 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ARID5AQ03989 594 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 SMARCB1Q12824 385 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 NFE2L1Q14494 772 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 KPNB1Q14974 876 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 TGFBIQ15582 683 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PHKG1Q16816 387 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CCDC58Q4VC31 144 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ARFGAP2Q8N6H7 521 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 BAP1Q92560 729 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 LPAR1Q92633 364 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PAWRQ96IZ0 340 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 IFT74Q96LB3 600 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 HINFPQ9BQA5 517 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ZBED2Q9BTP6 218 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 WDR11Q9BZH6 1224 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 UCKL1Q9NWZ5 548 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 KLHL3Q9UH77 587 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 DPP7Q9UHL4 492 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 RABGAP1Q9Y3P9 1069 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 WDR90Q96KV7 1748 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PTPRFP10586 1907 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 TBX3O15119 743 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 XPOTO43592 962 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 PEX11AO75192 247 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 NOL4O94818 638 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 GCNT3O95395 438 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 LYNP07948 512 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CYP3A4P08684 503 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 RGS2P41220 211 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 VPS41P49754 854 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 IST1P53990 364 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CDK18Q07002 472 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CEP55Q53EZ4 464 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 RINT1Q6NUQ1 792 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 CFAP36Q96G28 342 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ATP6V1G3Q96LB4 118 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 DHRS9Q9BPW9 319 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 HSD17B14Q9BPX1 270 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 LPIN3Q9BQK8 851 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 DDX23Q9BUQ8 820 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 CYP39A1Q9NYL5 469 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 SNCAIPQ9Y6H5 919 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 KRBA1A5PL33 1030 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 BHMG1C9JSJ3 638 aaPredicted RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 GAS7O60861 476 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PSMA3P25788 255 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 EIF4A3P38919 411 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 PRKCIP41743 596 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PLS1Q14651 629 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 MTERF2Q49AM1 385 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 TRPM8Q7Z2W7 1104 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ITIH5Q86UX2 942 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 LILRB4Q8NHJ6 448 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PLEKHO2Q8TD55 490 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 METTL2AQ96IZ6 378 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 GPATCH1Q9BRR8 931 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 ZNF577Q9BSK1 485 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 LSM14BQ9BX40 385 aaKnown RBP11.59□□□□□ -0.55
CDH3-203ENST00000542274 ELP3Q9H9T3 547 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 MLXIPQ9HAP2 919 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 ARHGEF3Q9NR81 526 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 TBC1D30Q9Y2I9 924 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 COQ6Q9Y2Z9 468 aa11.59□□□□□ -0.55
CDH3-203ENST00000542274 PPP2R3BQ9Y5P8 575 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms