RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SLC27A5Q9Y2P5 690 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 NME7Q9Y5B8 376 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 ZFP37Q9Y6Q3 630 aaPredicted RBP18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 O00370 1275 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 CYP26A1O43174 497 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 THAP12O43422 761 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 TBX10O75333 385 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 KCNA5P22460 613 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 LTBRP36941 435 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 TMEM31Q5JXX7 168 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 SYCE2Q6PIF2 218 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 TRIM72Q6ZMU5 477 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 VSTM4Q8IW00 320 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 NUP93Q8N1F7 819 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 PDZD8Q8NEN9 1154 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 OVCA2Q8WZ82 227 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 KHSRPQ92945 711 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 HSFY1Q96LI6 401 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 MYRFLQ96LU7 910 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 GCNAQ96QF7 691 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 LHX5Q9H2C1 402 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 ASAH2Q9NR71 780 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 KRT82Q9NSB4 513 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 AIPL1Q9NZN9 384 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 TSPAN16Q9UKR8 245 aa18.53■□□□□ 0.56
CLSTN3-210ENST00000540931 PLXNA3P51805 1871 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 GOLGA6L3A6NEY3 463 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 XPO1O14980 1071 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 LINC01565O15544 149 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 HCRTO43612 131 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 LSM8O95777 96 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 CCDC130P13994 396 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 PFKLP17858 780 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 ADORA2BP29275 332 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 CDC25CP30307 473 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 CLCN1P35523 988 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 ACADSBP45954 432 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 KLK7P49862 253 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 RARS2Q5T160 578 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 SFMBT2Q5VUG0 894 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 VPS36Q86VN1 386 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 CNGA4Q8IV77 575 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 DRC7Q8IY82 874 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 ANP32BQ92688 251 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 SLITRK1Q96PX8 696 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 S1PR5Q9H228 398 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 C11orf16Q9NQ32 467 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNHIT6Q9NWK9 470 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 HCN4Q9Y3Q4 1203 aa18.52■□□□□ 0.56
CLSTN3-210ENST00000540931 PIEZO1Q92508 2521 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 F8VP50 259 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 RNF225M0QZC1 329 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 SART1O43290 800 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 GPR37L1O60883 481 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 VNN2O95498 520 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 CYP11B1P15538 503 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 PLA2G4AP47712 749 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 PSEN1P49768 467 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 EPHA5P54756 1037 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 TMC5Q6UXY8 1006 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 CLEC20AQ6ZU45 233 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 PAQR9Q6ZVX9 377 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 PDZD4Q76G19 769 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 DNAJB7Q7Z6W7 309 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 KCTD13Q8WZ19 329 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 TRIM62Q9BVG3 475 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 TTYH3Q9C0H2 523 aa18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 WDR6Q9NNW5 1121 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-210ENST00000540931 M0QYV0 167 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 CCL16O15467 120 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 RFPL2O75678 378 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 DDX6P26196 483 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 ZNF75DP51815 510 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 APBA1Q02410 837 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 ORC1Q13415 861 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 GOLGA7BQ2TAP0 167 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 ARHGAP15Q53QZ3 475 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 SCML4Q8N228 414 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 ARHGAP18Q8N392 663 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 TMEM35BQ8NCS4 154 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 ZNF707Q96C28 371 aaPredicted RBP18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 TTLL2Q9BWV7 592 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 CRISPLD1Q9H336 500 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 CD320Q9NPF0 282 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 USTQ9Y2C2 406 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 NR2E1Q9Y466 385 aa18.5■□□□□ 0.55
CLSTN3-210ENST00000540931 NCANO14594 1321 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 SLC38A8A6NNN8 435 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 CLDN5O00501 218 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 EPHB6O15197 1021 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 GFPT2O94808 682 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 FBXO21O94952 628 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 ATF6P18850 670 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 BRD2P25440 801 aaKnown RBP18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 YWHAQP27348 245 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 CDC25BP30305 580 aa18.49■□□□□ 0.55
CLSTN3-210ENST00000540931 PRKCIP41743 596 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms