RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GCNT4Q9P109 453 aa15.1■□□□□ 0.01
USP28-209ENST00000540925 CCL26Q9Y258 94 aa15.1■□□□□ 0.01
USP28-209ENST00000540925 TICRRQ7Z2Z1 1910 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 F5P12259 2224 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 ZNF638Q14966 1978 aaKnown RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 CILPO75339 1184 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 PTPN5P54829 565 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 FZD5Q13467 585 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 GPIHBP1Q8IV16 184 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 MAB21L3Q8N8X9 362 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 ZMIZ2Q8NF64 920 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 NELFBQ8WX92 580 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 MRPS31Q92665 395 aaKnown RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 MED15Q96RN5 788 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 IMPG2Q9BZV3 1241 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 SMG9Q9H0W8 520 aaKnown RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 FAM124BQ9H5Z6 455 aaPredicted RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 MMRN2Q9H8L6 949 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 CSNK1G1Q9HCP0 422 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 LTB4R2Q9NPC1 389 aa15.09■□□□□ 0.01
USP28-209ENST00000540925 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP28-209ENST00000540925 ARMCX3Q9UH62 379 aaPredicted RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 MTF2Q9Y483 593 aaPredicted RBP15.09■□□□□ 0.01
USP28-209ENST00000540925 PATJQ8NI35 1801 aa15.08■□□□□ 0.01
USP28-209ENST00000540925 FAM92AA1XBS5 289 aa15.08■□□□□ 0
USP28-209ENST00000540925 ZNF263O14978 683 aa15.08■□□□□ 0
USP28-209ENST00000540925 MARSP56192 900 aaKnown RBP15.08■□□□□ 0
USP28-209ENST00000540925 ORC1Q13415 861 aa15.08■□□□□ 0
USP28-209ENST00000540925 TPRG1Q6ZUI0 275 aa15.08■□□□□ 0
USP28-209ENST00000540925 CELF5Q8N6W0 485 aaKnown RBP15.08■□□□□ 0
USP28-209ENST00000540925 C12orf29Q8N999 325 aa15.08■□□□□ 0
USP28-209ENST00000540925 DTWD2Q8NBA8 298 aa15.08■□□□□ 0
USP28-209ENST00000540925 BPIFB1Q8TDL5 484 aa15.08■□□□□ 0
USP28-209ENST00000540925 CLDN23Q96B33 292 aa15.08■□□□□ 0
USP28-209ENST00000540925 SMARCD1Q96GM5 515 aa15.08■□□□□ 0
USP28-209ENST00000540925 KCNK16Q96T55 309 aa15.08■□□□□ 0
USP28-209ENST00000540925 HNRNPABQ99729 332 aaKnown RBP15.08■□□□□ 0
USP28-209ENST00000540925 SMOQ99835 787 aa15.08■□□□□ 0
USP28-209ENST00000540925 FAM83CQ9BQN1 747 aa15.08■□□□□ 0
USP28-209ENST00000540925 KIF9Q9HAQ2 790 aa15.08■□□□□ 0
USP28-209ENST00000540925 METTL14Q9HCE5 456 aaKnown RBP15.08■□□□□ 0
USP28-209ENST00000540925 TDP1Q9NUW8 608 aa15.08■□□□□ 0
USP28-209ENST00000540925 CTNND2Q9UQB3 1225 aa15.08■□□□□ 0
USP28-209ENST00000540925 SIT1Q9Y3P8 196 aa15.08■□□□□ 0
USP28-209ENST00000540925 BICDL2A1A5D9 508 aa15.07■□□□□ 0
USP28-209ENST00000540925 C2orf78A6NCI8 922 aa15.07■□□□□ 0
USP28-209ENST00000540925 ZNF840PA6NDX5 716 aa15.07■□□□□ 0
USP28-209ENST00000540925 BEST1O76090 585 aa15.07■□□□□ 0
USP28-209ENST00000540925 OLFM2O95897 454 aa15.07■□□□□ 0
USP28-209ENST00000540925 CCDC130P13994 396 aa15.07■□□□□ 0
USP28-209ENST00000540925 TCF3P15923 654 aa15.07■□□□□ 0
USP28-209ENST00000540925 PFKLP17858 780 aa15.07■□□□□ 0
USP28-209ENST00000540925 CD72P21854 359 aa15.07■□□□□ 0
USP28-209ENST00000540925 ANXA13P27216 316 aa15.07■□□□□ 0
USP28-209ENST00000540925 AVPR1AP37288 418 aa15.07■□□□□ 0
USP28-209ENST00000540925 USP4Q13107 963 aa15.07■□□□□ 0
USP28-209ENST00000540925 PAK1Q13153 545 aa15.07■□□□□ 0
USP28-209ENST00000540925 CAMK4Q16566 473 aa15.07■□□□□ 0
USP28-209ENST00000540925 ARHGAP29Q52LW3 1261 aa15.07■□□□□ 0
USP28-209ENST00000540925 DCAF17Q5H9S7 520 aaPredicted RBP15.07■□□□□ 0
USP28-209ENST00000540925 KLHL10Q6JEL2 608 aa15.07■□□□□ 0
USP28-209ENST00000540925 TRIM59Q8IWR1 403 aa15.07■□□□□ 0
USP28-209ENST00000540925 UBR7Q8N806 425 aa15.07■□□□□ 0
USP28-209ENST00000540925 SLC2A14Q8TDB8 520 aa15.07■□□□□ 0
USP28-209ENST00000540925 TATDN2Q93075 761 aa15.07■□□□□ 0
USP28-209ENST00000540925 ARID3AQ99856 593 aa15.07■□□□□ 0
USP28-209ENST00000540925 NT5C1AQ9BXI3 368 aa15.07■□□□□ 0
USP28-209ENST00000540925 CLSTN2Q9H4D0 955 aa15.07■□□□□ 0
USP28-209ENST00000540925 DMAP1Q9NPF5 467 aaPredicted RBP15.07■□□□□ 0
USP28-209ENST00000540925 KRT82Q9NSB4 513 aa15.07■□□□□ 0
USP28-209ENST00000540925 LMBRD1Q9NUN5 540 aa15.07■□□□□ 0
USP28-209ENST00000540925 EHD2Q9NZN4 543 aa15.07■□□□□ 0
USP28-209ENST00000540925 ATP8B3O60423 1300 aa15.07■□□□□ 0
USP28-209ENST00000540925 MIA3Q5JRA6 1907 aa15.06■□□□□ 0
USP28-209ENST00000540925 HHLA1C9JL84 531 aa15.06■□□□□ 0
USP28-209ENST00000540925 OAS1P00973 400 aaKnown RBP15.06■□□□□ 0
USP28-209ENST00000540925 DCNP07585 359 aaKnown RBP15.06■□□□□ 0
USP28-209ENST00000540925 ZDHHC11BP0C7U3 371 aa15.06■□□□□ 0
USP28-209ENST00000540925 TARSP26639 723 aaKnown RBP15.06■□□□□ 0
USP28-209ENST00000540925 PPP3CCP48454 512 aa15.06■□□□□ 0
USP28-209ENST00000540925 FMO5P49326 533 aa15.06■□□□□ 0
USP28-209ENST00000540925 ZXDBP98169 803 aa15.06■□□□□ 0
USP28-209ENST00000540925 PLCB2Q00722 1185 aa15.06■□□□□ 0
USP28-209ENST00000540925 ZNF77Q15935 545 aa15.06■□□□□ 0
USP28-209ENST00000540925 WDR44Q5JSH3 913 aa15.06■□□□□ 0
USP28-209ENST00000540925 TCERG1LQ5VWI1 586 aa15.06■□□□□ 0
USP28-209ENST00000540925 SNX30Q5VWJ9 437 aa15.06■□□□□ 0
USP28-209ENST00000540925 ZNF852Q6ZMS4 543 aa15.06■□□□□ 0
USP28-209ENST00000540925 NUP93Q8N1F7 819 aa15.06■□□□□ 0
USP28-209ENST00000540925 LMO3Q8TAP4 145 aa15.06■□□□□ 0
USP28-209ENST00000540925 OVCA2Q8WZ82 227 aa15.06■□□□□ 0
USP28-209ENST00000540925 CHFRQ96EP1 664 aa15.06■□□□□ 0
USP28-209ENST00000540925 ZFYVE19Q96K21 471 aa15.06■□□□□ 0
USP28-209ENST00000540925 CYP2S1Q96SQ9 504 aa15.06■□□□□ 0
USP28-209ENST00000540925 NELL2Q99435 816 aa15.06■□□□□ 0
USP28-209ENST00000540925 PIAS3Q9Y6X2 628 aa15.06■□□□□ 0
USP28-209ENST00000540925 HELZP42694 1942 aaKnown RBP15.05■□□□□ 0
USP28-209ENST00000540925 FRYLO94915 3013 aa15.05■□□□□ 0
USP28-209ENST00000540925 FAM170BA6NMN3 283 aa15.05■□□□□ -0
USP28-209ENST00000540925 DPYSL4O14531 572 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms