RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CD207Q9UJ71 328 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 USP15Q9Y4E8 981 aaPredicted RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 LRRC53A6NM62 1247 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SLC38A8A6NNN8 435 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 AP1G2O75843 785 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 GFPT2O94808 682 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 MICAL2O94851 1124 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 TPM1P09493 284 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 CD19P15391 556 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 CYP11B1P15538 503 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SOX5P35711 763 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 MAP3K7CLP57077 242 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 PDE4CQ08493 712 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 GOLGA8FQ08AF8 430 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 GOLGA8DPQ0D2H9 430 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 CNGA2Q16280 664 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SGO2Q562F6 1265 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 LIN9Q5TKA1 542 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 VSTM1Q6UX27 236 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 RTL10Q7L3V2 364 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 BHLHA9Q7RTU4 235 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 GRASPQ7Z6J2 395 aaPredicted RBP13.76□□□□□ -0.21
CCDC42-202ENST00000539522 DNAJB7Q7Z6W7 309 aaPredicted RBP13.76□□□□□ -0.21
CCDC42-202ENST00000539522 ANKRD52Q8NB46 1076 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SCAMP5Q8TAC9 235 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 UBA3Q8TBC4 463 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 EPS8L1Q8TE68 723 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 PSMG2Q969U7 264 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 TCEAL4Q96EI5 215 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SMARCD1Q96GM5 515 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 SPATA17Q96L03 361 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 FAM81BQ96LP2 452 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 PCMTD1Q96MG8 357 aaPredicted RBP13.76□□□□□ -0.21
CCDC42-202ENST00000539522 DUSP16Q9BY84 665 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 POMKQ9H5K3 350 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 IL37Q9NZH6 218 aa13.76□□□□□ -0.21
CCDC42-202ENST00000539522 MUC3AQ02505 3323 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 IL9P15248 144 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 NPR3P17342 541 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 GNA15P30679 374 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 ELF1P32519 619 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 USP8P40818 1118 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 GPD2P43304 727 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 TUFMP49411 452 aaKnown RBP13.75□□□□□ -0.21
CCDC42-202ENST00000539522 TRIM14Q14142 442 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 SMYD5Q6GMV2 418 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 GAREM2Q75VX8 874 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 SCN4BQ8IWT1 228 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 ITFG1Q8TB96 612 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 SLC35F5Q8WV83 523 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 SMG7Q92540 1137 aaKnown RBP13.75□□□□□ -0.21
CCDC42-202ENST00000539522 PCDHB18PQ96TA0 734 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 MED10Q9BTT4 135 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 TJP2Q9UDY2 1190 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 KIAA1257Q9ULG3 409 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 CAPN11Q9UMQ6 739 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 COG5Q9UP83 839 aa13.75□□□□□ -0.21
CCDC42-202ENST00000539522 A0A1W2PQJ5 194 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 FAM170AA1A519 330 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 FAM92AA1XBS5 289 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 LRG1P02750 347 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 F11P03951 625 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 RHOP08100 348 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 MMEP08473 750 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 FAM200BP0CF97 657 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 GJA1P17302 382 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 CASP14P31944 242 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 GRIK1P39086 918 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 RPL34P49207 117 aaKnown RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 FMO1Q01740 532 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 ITIH3Q06033 890 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 SMAD4Q13485 552 aaKnown RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 ARID5BQ14865 1188 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 RAB41Q5JT25 222 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 STXBP5Q5T5C0 1151 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 HGSNATQ68CP4 663 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 PMF1Q6P1K2 205 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 PIGZQ86VD9 579 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 LRRC8AQ8IWT6 810 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 SHKBP1Q8TBC3 707 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 SECISBP2LQ93073 1101 aaKnown RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 MYRFLQ96LU7 910 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 CORO1BQ9BR76 489 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 TTLL2Q9BWV7 592 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 EDEM3Q9BZQ6 932 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 WDR6Q9NNW5 1121 aaKnown RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 DMAP1Q9NPF5 467 aaPredicted RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 AIPL1Q9NZN9 384 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 PCDHGC3Q9UN70 934 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 DAAM1Q9Y4D1 1078 aa13.74□□□□□ -0.21
CCDC42-202ENST00000539522 TCF20Q9UGU0 1960 aaKnown RBP13.74□□□□□ -0.21
CCDC42-202ENST00000539522 NCANO14594 1321 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 HELZP42694 1942 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 AKR1B15C9JRZ8 316 aaPredicted RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 TRIM66O15016 1216 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 THAP12O43422 761 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 NRDCO43847 1150 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 BMP1P13497 986 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 TRIM21P19474 475 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 STAT1P42224 750 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms