RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CDKAL1Q5VV42 579 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 ARHGAP17Q68EM7 881 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 TXNDC8Q6A555 127 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 DPY19L2P1Q6NXN4 242 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 CLEC20AQ6ZU45 233 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 C11orf57Q6ZUT1 292 aaPredicted RBP13.76□□□□□ -0.21
VPS28-216ENST00000533806 ARHGEF19Q8IW93 802 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 MFSD6LQ8IWD5 586 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 CMTM8Q8IZV2 173 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 NUP93Q8N1F7 819 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 E2F7Q96AV8 911 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 KREMEN1Q96MU8 473 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 NT5C1BQ96P26 610 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 MED10Q9BTT4 135 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 INTS2Q9H0H0 1204 aaKnown RBP13.76□□□□□ -0.21
VPS28-216ENST00000533806 KRT82Q9NSB4 513 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 OBP2AQ9NY56 170 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 EHD2Q9NZN4 543 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 GCNT4Q9P109 453 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 CNTN6Q9UQ52 1028 aa13.76□□□□□ -0.21
VPS28-216ENST00000533806 ZNF840PA6NDX5 716 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SHISA7A6NL88 538 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 HEPACAM2A8MVW5 462 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 RNF225M0QZC1 329 aaPredicted RBP13.75□□□□□ -0.21
VPS28-216ENST00000533806 ARNTLO00327 626 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 CFHP08603 1231 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 PSMC3P17980 439 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 PPP3CCP48454 512 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 ZNF132P52740 706 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 MAN2A1Q16706 1144 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SNX30Q5VWJ9 437 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SASS6Q6UVJ0 657 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SCAMP5Q8TAC9 235 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 DEPDC1BQ8WUY9 529 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 MRPS31Q92665 395 aaKnown RBP13.75□□□□□ -0.21
VPS28-216ENST00000533806 USP13Q92995 863 aaPredicted RBP13.75□□□□□ -0.21
VPS28-216ENST00000533806 JAKMIP2Q96AA8 810 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 PBXIP1Q96AQ6 731 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 HEXIM2Q96MH2 286 aaKnown RBP13.75□□□□□ -0.21
VPS28-216ENST00000533806 GCNAQ96QF7 691 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SLC22A12Q96S37 553 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 TUBGCP2Q9BSJ2 902 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 DUSP16Q9BY84 665 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 SLITRK6Q9H5Y7 841 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 PNPLA8Q9NP80 782 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 TRPV5Q9NQA5 729 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 ANO10Q9NW15 660 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 COMMD8Q9NX08 183 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 NFE2L3Q9Y4A8 694 aa13.75□□□□□ -0.21
VPS28-216ENST00000533806 C2orf78A6NCI8 922 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 RTN3O95197 1032 aaPredicted RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 OLFM2O95897 454 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ZDHHC11BP0C7U3 371 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 FAM200BP0CF97 657 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 PFKLP17858 780 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 SLC9A1P19634 815 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 YWHAQP27348 245 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ADORA2BP29275 332 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 SLC5A3P53794 718 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 MAP3K7CLP57077 242 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 YWHAEP62258 255 aaKnown RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 TAF10Q12962 218 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ZNF268Q14587 947 aaPredicted RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 STX1AQ16623 288 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 TPD52L1Q16890 204 aaPredicted RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 KLHL40Q2TBA0 621 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 TCP11X2Q5H9J9 407 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 SMYD5Q6GMV2 418 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 TRIM65Q6PJ69 517 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 RRAGAQ7L523 313 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 GPRIN1Q7Z2K8 1008 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 GPIHBP1Q8IV16 184 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 FAM114A1Q8IWE2 563 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 PPM1KQ8N3J5 372 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 FBXL6Q8N531 539 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 MAB21L3Q8N8X9 362 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ANKRD52Q8NB46 1076 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 RIN3Q8TB24 985 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 OVCA2Q8WZ82 227 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 CYP2S1Q96SQ9 504 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ZSWIM1Q9BR11 485 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 DDX23Q9BUQ8 820 aaKnown RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 TRMT61BQ9BVS5 477 aaKnown RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 UBXN6Q9BZV1 441 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 SMG9Q9H0W8 520 aaKnown RBP13.74□□□□□ -0.21
VPS28-216ENST00000533806 NDST4Q9H3R1 872 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 TDP1Q9NUW8 608 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 KIAA1257Q9ULG3 409 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 CCL26Q9Y258 94 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 ZDBF2Q9HCK1 2354 aa13.74□□□□□ -0.21
VPS28-216ENST00000533806 WDFY4Q6ZS81 3184 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 KCNJ18B7U540 433 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 O00370 1275 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 OAS1P00973 400 aaKnown RBP13.73□□□□□ -0.21
VPS28-216ENST00000533806 PAEPP09466 180 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 TCF3P15923 654 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 TRIM21P19474 475 aaKnown RBP13.73□□□□□ -0.21
VPS28-216ENST00000533806 EEF1GP26641 437 aaKnown RBP13.73□□□□□ -0.21
VPS28-216ENST00000533806 PON1P27169 355 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 MTIF2P46199 727 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms