RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ERICH4A6NGS2 130 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 LRRIQ3A6PVS8 624 aaPredicted RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 HEPACAM2A8MVW5 462 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 CHADO15335 359 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 KRT86O43790 486 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 GDF9O60383 454 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 MOCS3O95396 460 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 MYBL2P10244 700 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 MYL4P12829 197 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 RPL9P32969 192 aaKnown RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 VIPR2P41587 438 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 KRT83P78385 493 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 GFPT1Q06210 699 aaPredicted RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 SOX4Q06945 474 aaPredicted RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 SRSF5Q13243 272 aaKnown RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 CTXN3Q4LDR2 81 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 ALKAL1Q6UXT8 129 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 CEP68Q76N32 757 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 YAF2Q8IY57 180 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 GSPT2Q8IYD1 628 aaKnown RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 FAM160A2Q8N612 972 aaPredicted RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 COG1Q8WTW3 980 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 HNRNPLLQ8WVV9 542 aaKnown RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 LOXL4Q96JB6 756 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 IFT74Q96LB3 600 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 PSMB7Q99436 277 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 PDE11AQ9HCR9 933 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 ASAH2Q9NR71 780 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 TOPORSQ9NS56 1045 aaPredicted RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 ZNHIT6Q9NWK9 470 aaKnown RBP8.8□□□□□ -1
NEDD8-207ENST00000533242 TNFSF13BQ9Y275 285 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 PCDHA13Q9Y5I0 950 aa8.8□□□□□ -1
NEDD8-207ENST00000533242 EPG5Q9HCE0 2579 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 MAP1BP46821 2468 aaKnown RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 NCANO14594 1321 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 ATP8B1O43520 1251 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 KCNE1P15382 129 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 KCNA1Q09470 495 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TWF1Q12792 350 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TUBB2AQ13885 445 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 AASDHQ4L235 1098 aaPredicted RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 N4BP2L1Q5TBK1 243 aaPredicted RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 ZNF280DQ6N043 979 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 SUSD3Q96L08 255 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TUBB2BQ9BVA1 445 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 ZHX3Q9H4I2 956 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 CEP72Q9P209 647 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 EML5Q05BV3 1969 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TPRP12270 2363 aaKnown RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 FRMD3A2A2Y4 597 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 KIF20AO95235 890 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 LCA5LO95447 670 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 MUTP22033 750 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 CXCR5P32302 372 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 KPNA1P52294 538 aaPredicted RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 FKBP3Q00688 224 aaKnown RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 C2orf54Q08AI8 447 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 PSMD2Q13200 908 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 PLD1Q13393 1074 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TEAD2Q15562 447 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 RALGPS2Q86X27 583 aaPredicted RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 DNAAF5Q86Y56 855 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 TRIM59Q8IWR1 403 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 SYNPOQ8N3V7 929 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 APPL2Q8NEU8 664 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 ERMNQ8TAM6 284 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 SHKBP1Q8TBC3 707 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 KIFAP3Q92845 792 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 GDAP1L1Q96MZ0 367 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 REEP2Q9BRK0 252 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 CDT1Q9H211 546 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 RBM12Q9NTZ6 932 aaKnown RBP8.79□□□□□ -1
NEDD8-207ENST00000533242 PCDHB8Q9UN66 801 aa8.79□□□□□ -1
NEDD8-207ENST00000533242 SPAG17Q6Q759 2223 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 MYBPHLA2RUH7 354 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 SPECC1L-ADORA2AF8WAN1 911 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 TM4SF5O14894 197 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 EPN2O95208 641 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 GJA1P17302 382 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 RPA1P27694 616 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 FCHO2Q0JRZ9 810 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 KIF5AQ12840 1032 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 CCDC40Q4G0X9 1142 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 WDR44Q5JSH3 913 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 HEATR6Q6AI08 1181 aaKnown RBP8.78□□□□□ -1
NEDD8-207ENST00000533242 DPY19L2P1Q6NXN4 242 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 CREG2Q8IUH2 290 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 C12orf50Q8NA57 414 aaPredicted RBP8.78□□□□□ -1
NEDD8-207ENST00000533242 BEST2Q8NFU1 509 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 NEK11Q8NG66 645 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 RSPRY1Q96DX4 576 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 KIFC3Q9BVG8 833 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 LRRC3Q9BY71 257 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.78□□□□□ -1
NEDD8-207ENST00000533242 NUB1Q9Y5A7 615 aa8.78□□□□□ -1
NEDD8-207ENST00000533242 K7ERI5 159 aa8.77□□□□□ -1
NEDD8-207ENST00000533242 BUB1O43683 1085 aa8.77□□□□□ -1
NEDD8-207ENST00000533242 ZNF806P0C7X5 589 aa8.77□□□□□ -1
NEDD8-207ENST00000533242 MCF2P10911 925 aa8.77□□□□□ -1
NEDD8-207ENST00000533242 CTHP32929 405 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms