RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	ZNF668	Q96K58	619 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-233	ENST00000531141	TNIP3	Q96KP6	325 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	SORCS2	Q96PQ0	1159 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	ZCWPW1	Q9H0M4	648 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	GLOD4	Q9HC38	313 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	DNMT3B	Q9UBC3	853 aa	Known RBP	4.61	□□□□□ -1.67
CD44-233	ENST00000531141	MRPS17	Q9Y2R5	130 aa	Known RBP	4.61	□□□□□ -1.67
CD44-233	ENST00000531141	VWC2L	B2RUY7	222 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141		H7C4K7	107 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	RAB27B	O00194	218 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	APOL1	O14791	398 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CD3EAP	O15446	510 aa	Known RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PIAS2	O75928	621 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	RASAL1	O95294	804 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	ONECUT2	O95948	504 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PDHA1	P08559	390 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	ZFX	P17010	805 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	TPH1	P17752	444 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	FGFR2	P21802	821 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PROZ	P22891	400 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	TNFSF4	P23510	183 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PCSK6	P29122	969 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CXCR5	P32302	372 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	GRIA3	P42263	894 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CLCN2	P51788	898 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	BMPR2	Q13873	1038 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	ZNF169	Q14929	603 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PLAC9	Q5JTB6	97 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	DEPDC1	Q5TB30	811 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	FCRL6	Q6DN72	434 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	MZT2A	Q6P582	158 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	RNF44	Q7L0R7	432 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	BEND5	Q7L4P6	421 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	MAVS	Q7Z434	540 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	ATP11C	Q8NB49	1132 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	DNAJB14	Q8TBM8	379 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	SOCS4	Q8WXH5	440 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	RFK	Q969G6	155 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CHFR	Q96EP1	664 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	PDLIM2	Q96JY6	352 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CCDC138	Q96M89	665 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	MYD88	Q99836	296 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	EIF2A	Q9BY44	585 aa	Known RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	HEYL	Q9NQ87	328 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-233	ENST00000531141	FOXJ2	Q9P0K8	574 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	MYO1A	Q9UBC5	1043 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	CAPN11	Q9UMQ6	739 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	TBC1D30	Q9Y2I9	924 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	DMRT1	Q9Y5R6	373 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	SNX14	Q9Y5W7	946 aa		4.6	□□□□□ -1.67
CD44-233	ENST00000531141	A1BG	P04217	495 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	IL6R	P08887	468 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-233	ENST00000531141	MYL4	P12829	197 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	ADORA2A	P29274	412 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	MTHFS	P49914	203 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	BCAT1	P54687	386 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	SIM1	P81133	766 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-233	ENST00000531141	PMS2P11	Q13670	270 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	CCNI	Q14094	377 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	BRD3	Q15059	726 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	NPY5R	Q15761	445 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	CATSPERG	Q6ZRH7	1159 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	ZNF551	Q7Z340	670 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-233	ENST00000531141	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-233	ENST00000531141	ABRA	Q8N0Z2	381 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	PARD3B	Q8TEW8	1205 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	GLG1	Q92896	1179 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	PPP2R3C	Q969Q6	453 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	RIPOR3	Q96MK2	946 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	ELAC2	Q9BQ52	826 aa	Known RBP	4.59	□□□□□ -1.67
CD44-233	ENST00000531141	TRIM5	Q9C035	493 aa		4.59	□□□□□ -1.67
CD44-233	ENST00000531141	LINC00473	A8K010	186 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	RGS10	O43665	173 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	TTLL1	O95922	423 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	LMNA	P02545	664 aa	Known RBP	4.58	□□□□□ -1.68
CD44-233	ENST00000531141	NR2F6	P10588	404 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	BTF3	P20290	206 aa	Known RBP	4.58	□□□□□ -1.68
CD44-233	ENST00000531141	EPHA3	P29320	983 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	PRKAR1B	P31321	381 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	TPTE	P56180	551 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	TIAL1	Q01085	375 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
CD44-233	ENST00000531141	BTK	Q06187	659 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	ZNF750	Q32MQ0	723 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	PRR16	Q569H4	304 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	SYCP2L	Q5T4T6	812 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	KLHDC7A	Q5VTJ3	777 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	IZUMO3	Q5VZ72	239 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	PLAG1	Q6DJT9	500 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	USP17L6P	Q6QN14	398 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	KRT28	Q7Z3Y7	464 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	SRL	Q86TD4	932 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	IZUMO1	Q8IYV9	350 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	SAMD3	Q8N6K7	520 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	DEPTOR	Q8TB45	409 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	TMEM171	Q8WVE6	324 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	BRI3BP	Q8WY22	251 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	SGCZ	Q96LD1	299 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	AGAP2	Q99490	1192 aa		4.58	□□□□□ -1.68
CD44-233	ENST00000531141	DUSP26	Q9BV47	211 aa		4.58	□□□□□ -1.68

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