RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GPD1P21695 349 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ADORA2BP29275 332 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 PCK1P35558 622 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 CDKN2BP42772 138 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 RPL21P46778 160 aaKnown RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 CLCNKBP51801 687 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 BCAT1P54687 386 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 SLC6A3Q01959 620 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 HSP90B2PQ58FF3 399 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 TRAF7Q6Q0C0 670 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 RXFP2Q8WXD0 754 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ACSF2Q96CM8 615 aaPredicted RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 SENP8Q96LD8 212 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ADAM2Q99965 735 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 CNPY3Q9BT09 278 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 HMX1Q9NP08 348 aaPredicted RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 ASNSD1Q9NWL6 643 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 hCG_1818297A0A087WSY0 165 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 MIPP30301 263 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 RPL9P32969 192 aaKnown RBP21.76■■□□□ 1.07
VPS28-209ENST00000528142 SNX16P57768 344 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 TFDP3Q5H9I0 405 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ZFYVE27Q5T4F4 411 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ZDHHC17Q8IUH5 632 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 B3GALNT2Q8NCR0 500 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 SLC2A14Q8TDB8 520 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 TRPV6Q9H1D0 765 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 ZWILCHQ9H900 591 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 RSAD1Q9HA92 442 aa21.76■■□□□ 1.07
VPS28-209ENST00000528142 A0A1W2PQ45 241 aaPredicted RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 A0A1W2PQY0 241 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 LRRD1A4D1F6 860 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 DPYSL4O14531 572 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 HSF2BPO75031 334 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 RNF8O76064 485 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 TJP3O95049 919 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 CKBP12277 381 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 PDGFRAP16234 1089 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 TKTP29401 623 aaKnown RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 GBP1P32455 592 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 TAF5Q15542 800 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 TAZQ16635 292 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 SYDE1Q6ZW31 735 aaPredicted RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 SCUBE3Q8IX30 993 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 C3orf58Q8NDZ4 430 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 ATL2Q8NHH9 583 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 RIN2Q8WYP3 895 aaPredicted RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 LRRC45Q96CN5 670 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 ZIM3Q96PE6 472 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 HNRNPABQ99729 332 aaKnown RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 SH3GL2Q99962 352 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 UNC93B1Q9H1C4 597 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 CYLDQ9NQC7 956 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 FEZ2Q9UHY8 353 aaPredicted RBP21.75■■□□□ 1.07
VPS28-209ENST00000528142 NEU2Q9Y3R4 380 aa21.75■■□□□ 1.07
VPS28-209ENST00000528142 ATP2C2O75185 946 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 CAPN15O75808 1086 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 TRUB2O95900 331 aaKnown RBP21.74■■□□□ 1.07
VPS28-209ENST00000528142 GABPB1Q06547 395 aaPredicted RBP21.74■■□□□ 1.07
VPS28-209ENST00000528142 SH3PXD2AQ5TCZ1 1133 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 KAZNQ674X7 775 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 CMASQ8NFW8 434 aaPredicted RBP21.74■■□□□ 1.07
VPS28-209ENST00000528142 FMO2Q99518 471 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 B3GNT5Q9BYG0 378 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 TXLNGYQ9BZA5 131 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 EFR3BQ9Y2G0 817 aa21.74■■□□□ 1.07
VPS28-209ENST00000528142 GRAP2O75791 330 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PTPN1P18031 435 aaKnown RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 FAM193AP78312 1265 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 KRT17Q04695 432 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 MTFR1Q15390 333 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 UPP1Q16831 310 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 SMTNL2Q2TAL5 461 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 CCDC14Q49A88 953 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 KCNT1Q5JUK3 1230 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 CFAP58Q5T655 872 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 KIAA0319Q5VV43 1072 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 TMC3Q7Z5M5 1100 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 ZNF598Q86UK7 904 aaKnown RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 FUKQ8N0W3 1084 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 GRK7Q8WTQ7 553 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PGBD4Q96DM1 585 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 HSFY1Q96LI6 401 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PCSK1NQ9UHG2 260 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 USP18Q9UMW8 372 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 MYCP01106 439 aaPredicted RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 SKIP12755 728 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 KDELR1P24390 212 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 ACAT1P24752 427 aaKnown RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 HSD17B3P37058 310 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 SCNN1AP37088 669 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PLTPP55058 493 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PTK6Q13882 451 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PPP1R7Q15435 360 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 UAP1Q16222 522 aaPredicted RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 ODF2Q5BJF6 829 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 DRICH1Q6PGQ1 229 aaPredicted RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 PAQR9Q6ZVX9 377 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 CYP4V2Q6ZWL3 525 aaPredicted RBP21.73■■□□□ 1.07
VPS28-209ENST00000528142 ECHDC2Q86YB7 292 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms