RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 USP18Q9UMW8 372 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 SPECC1L-ADORA2AF8WAN1 911 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 VNN1O95497 513 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 PRAMEF12O95522 483 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CST3P01034 146 aaPredicted RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 CHRNB1P11230 501 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ATF6P18850 670 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CDC25CP30307 473 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CTHP32929 405 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CXCL12P48061 93 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 TUFMP49411 452 aaKnown RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 CDR1P51861 262 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 MLLT6P55198 1093 aaPredicted RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 CYP4F8P98187 520 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 MYL7Q01449 175 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 SATB1Q01826 763 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CETN1Q12798 172 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 SGSM1Q2NKQ1 1148 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 WDR72Q3MJ13 1102 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ARHGAP29Q52LW3 1261 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 WSCD1Q658N2 575 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 MAMSTRQ6ZN01 415 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 CREBRFQ8IUR6 639 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 GPIHBP1Q8IV16 184 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ADGRF2Q8IZF7 708 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 PDCL2Q8N4E4 241 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 FBXL13Q8NEE6 735 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ENOX1Q8TC92 643 aaKnown RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 ZFYVE19Q96K21 471 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 MED15Q96RN5 788 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 MMS19Q96T76 1030 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ZCWPW1Q9H0M4 648 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 XYLT2Q9H1B5 865 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 RBM12Q9NTZ6 932 aaKnown RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 CDV3Q9UKY7 258 aaKnown RBP10.81□□□□□ -0.68
VPS28-204ENST00000526054 L1RE1Q9UN81 338 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS28-204ENST00000526054 DENND4CQ5VZ89 1909 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 NCOR2Q9Y618 2525 aa10.81□□□□□ -0.68
VPS28-204ENST00000526054 ZNF638Q14966 1978 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 SYCE3A1L190 88 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 MYBPHLA2RUH7 354 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 P4HA2O15460 535 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 ASS1P00966 412 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 FAM163BP0C2L3 166 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 SDHBP21912 280 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 PCSK1P29120 753 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 MTIF2P46199 727 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 LHX1P48742 406 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 FMO5P49326 533 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 NOP14P78316 857 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 PLCB2Q00722 1185 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 TSPY1Q01534 308 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 TAF12Q16514 161 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 LPAL2Q16609 132 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 SCARA3Q6AZY7 606 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 PRR23BQ6ZRT6 265 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 Q6ZS52 159 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 C11orf57Q6ZUT1 292 aaPredicted RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 RALGPS2Q86X27 583 aaPredicted RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 TRIM59Q8IWR1 403 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 SPEM1Q8N4L4 309 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 TTC8Q8TAM2 541 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 SPPL2BQ8TCT7 592 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 BPIFB1Q8TDL5 484 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 TAS1R2Q8TE23 839 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 C2orf15Q8WU43 125 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 TASP1Q9H6P5 420 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 DDX43Q9NXZ2 648 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 OBP2AQ9NY56 170 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 ABI2Q9NYB9 513 aaPredicted RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 GTSE1Q9NYZ3 720 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 NXF1Q9UBU9 619 aaKnown RBP10.8□□□□□ -0.68
VPS28-204ENST00000526054 NFE2L3Q9Y4A8 694 aa10.8□□□□□ -0.68
VPS28-204ENST00000526054 TPRP12270 2363 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 PRR5-ARHGAP8B1AHC4 643 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 PMM2O15305 246 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 TACC1O75410 805 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 AFPP02771 609 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 WARSP23381 471 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 EEF1GP26641 437 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 ARHGAP8P85298 464 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 MYL5Q02045 173 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 SMARCB1Q12824 385 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 GAS6Q14393 721 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 SOWAHAQ2M3V2 549 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 ANO6Q4KMQ2 910 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 CBWD6Q4V339 395 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 WDR44Q5JSH3 913 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 CBWD3Q5JTY5 395 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 DGKKQ5KSL6 1271 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 CBWD5Q5RIA9 395 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 LAIR1Q6GTX8 287 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 TXNDC11Q6PKC3 985 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 SCARA5Q6ZMJ2 495 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 LIMS2Q7Z4I7 341 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 DCP1BQ8IZD4 617 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 CELF5Q8N6W0 485 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 GIPC2Q8TF65 315 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 LRRC3BQ96PB8 259 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms