RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 SMCR8Q8TEV9 937 aaPredicted RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 MIEF2Q96C03 454 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 MAML3Q96JK9 1138 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 SLX1AQ9BQ83 275 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 TMX1Q9H3N1 280 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 NELFAQ9H3P2 528 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 PSD3Q9NYI0 1048 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 C11orf21Q9P2W6 132 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 SAE1Q9UBE0 346 aaPredicted RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 RRP15Q9Y3B9 282 aaKnown RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 PLXNA1Q9UIW2 1896 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 HECTD1Q9ULT8 2610 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 PROB1E7EW31 1015 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 EYA2O00167 538 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 CBX4O00257 560 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 SNUPNO95149 360 aaKnown RBP6.07□□□□□ -1.44
NUP54-218ENST00000515460 RPS6KA3P51812 740 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 ADCY1Q08828 1119 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 TCP10Q12799 353 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 GRIK3Q13003 919 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 CRYMQ14894 314 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 PUM3Q15397 648 aaKnown RBP6.07□□□□□ -1.44
NUP54-218ENST00000515460 KLHL40Q2TBA0 621 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 KRT40Q6A162 431 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 SLFN12LQ6IEE8 588 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 SYT10Q6XYQ8 523 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 GAS2L3Q86XJ1 694 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 D2HGDHQ8N465 521 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 FBXO18Q8NFZ0 1043 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 WDR66Q8TBY9 1149 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 SSH1Q8WYL5 1049 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 LPIN2Q92539 896 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 APPBP2Q92624 585 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 GFM2Q969S9 779 aaKnown RBP6.07□□□□□ -1.44
NUP54-218ENST00000515460 HOOK2Q96ED9 719 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 FAXDC2Q96IV6 333 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 IKZF4Q9H2S9 585 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 KANSL2Q9H9L4 492 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 ZNF446Q9NWS9 450 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 BLOC1S6Q9UL45 172 aa6.07□□□□□ -1.44
NUP54-218ENST00000515460 FRYLO94915 3013 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 A0A0G2JMZ2 1700 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 PMS2P1A4D2B8 440 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 CAPN14A8MX76 684 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 KIF2AO00139 706 aaPredicted RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 CXCL11O14625 94 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 SLC26A4O43511 780 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 WDHD1O75717 1129 aaPredicted RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 IFIT1P09914 478 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 FAM163BP0C2L3 166 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 GCFC2P16383 781 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 SDSP20132 328 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 PRDX5P30044 214 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TRPC1P48995 793 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 FLT3LGP49771 235 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 SESN3P58005 492 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 ADAM15Q13444 863 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TUBA3CQ13748 450 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 NEDD9Q14511 834 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 SART3Q15020 963 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 EPHA7Q15375 998 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 DGKDQ16760 1214 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 PRAMEF9Q5VWM5 478 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TUBA3EQ6PEY2 450 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 ANKRD13BQ86YJ7 626 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 ERC1Q8IUD2 1116 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 IQCF2Q8IXL9 164 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 ZZZ3Q8IYH5 903 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 SHCBP1Q8NEM2 672 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 OR5AN1Q8NGI8 311 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 MIPOL1Q8TD10 442 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 CACTINQ8WUQ7 758 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 TCP11Q8WWU5 503 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TUBGCP5Q96RT8 1024 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TRIM7Q9C029 511 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 TRIM6Q9C030 488 aaPredicted RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 MMRN2Q9H8L6 949 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 AGO3Q9H9G7 860 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 TRPV5Q9NQA5 729 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 GNL3LQ9NVN8 582 aaKnown RBP6.06□□□□□ -1.44
NUP54-218ENST00000515460 TMOD2Q9NZR1 351 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 MAGEL2Q9UJ55 1249 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.06□□□□□ -1.44
NUP54-218ENST00000515460 ITPR3Q14573 2671 aa6.06□□□□□ -1.44
NUP54-218ENST00000515460 NBEAQ8NFP9 2946 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 MAST3O60307 1309 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 PTPRCP08575 1304 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 SMTNL1A8MU46 457 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 DVL2O14641 736 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 GAS7O60861 476 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 CCDC175P0C221 793 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 MYBL2P10244 700 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 SLC5A1P13866 664 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 VCAM1P19320 739 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 STAT3P40763 770 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 PHKA1P46020 1223 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 BCAR1P56945 870 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms