RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DGCR14Q96DF8 476 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 HES6Q96HZ4 224 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 VPS39Q96JC1 886 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 GRIP2Q9C0E4 1043 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PDGFDQ9GZP0 370 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 TMEM165Q9HC07 324 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 BLOC1S6Q9UL45 172 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PCDHA3Q9Y5H8 950 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 RBAK-RBAKDNI3L0D1 243 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 M0R3G1 203 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 KCNN4O15554 427 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 DGKIO75912 1065 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 RBP3P10745 1247 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ALADP13716 330 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 RAG1P15918 1043 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ADRA1DP25100 572 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 EFNA5P52803 228 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ITGA9Q13797 1035 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 LIN52Q52LA3 116 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 MROH9Q5TGP6 573 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF677Q86XU0 584 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 OR6Y1Q8NGX8 325 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ASAP3Q8TDY4 903 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 SEPT1Q8WYJ6 367 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ART4Q93070 314 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PRMT6Q96LA8 375 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PRPF18Q99633 342 aaKnown RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 GBA2Q9HCG7 927 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ARHGEF3Q9NR81 526 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 AGPAT3Q9NRZ7 376 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 BFARQ9NZS9 450 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 CCL15-CCL14A0A0B4J2E2 113 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 C2CD2LO14523 706 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PGM3O95394 542 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ALDH1A1P00352 501 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 CCDC159P0C7I6 412 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 CHRM1P11229 460 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 SSTR3P32745 418 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 TBL3Q12788 808 aaKnown RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PDK3Q15120 406 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 CCL15Q16663 113 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 BNC2Q6ZN30 1099 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 CATSPER3Q86XQ3 398 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 GPD1LQ8N335 351 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 DNAJC18Q9H819 358 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 KCND2Q9NZV8 630 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PAK5Q9P286 719 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 UBR1Q8IWV7 1749 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 ATP5BP06576 529 aaKnown RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 HSPA1AP0DMV8 641 aaKnown RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 HSPA1BP0DMV9 641 aaKnown RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 RPA3P35244 121 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-211ENST00000513346 PTK6Q13882 451 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 MFSD5Q6N075 450 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 SCN4BQ8IWT1 228 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 TMCO5AQ8N6Q1 288 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 FEZF2Q8TBJ5 459 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 SLC20A1Q8WUM9 679 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 GCNAQ96QF7 691 aa11.68□□□□□ -0.54
TCOF1-211ENST00000513346 UPP2O95045 317 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 GTF2A2P52657 109 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 ATP1A4Q13733 1029 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SLC5A9Q2M3M2 681 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 APTXQ7Z2E3 356 aaKnown RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF554Q86TJ5 538 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 ECHDC2Q86YB7 292 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 PRELID2Q8N945 189 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 OR6J1Q8NGC5 347 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SKA2Q8WVK7 121 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DACH2Q96NX9 599 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 NEUROG2Q9H2A3 272 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SCHIP1Q9P0W5 487 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DNAJC16Q9Y2G8 782 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 GOLGA8CPA6NN73 597 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SMIM22K7EJ46 135 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DYNC1LI2O43237 492 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 CHEK2O96017 543 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 RAB27AP51159 221 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 C21orf59P57076 290 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DUOXA2Q1HG44 320 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 MAP1SQ66K74 1059 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 LRRC8BQ6P9F7 803 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 LRRC55Q6ZSA7 311 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 PYDC1Q8WXC3 89 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 ATG4CQ96DT6 458 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 FBXO28Q9NVF7 368 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DNALI1O14645 258 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 CIITAP33076 1130 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 OTUD4Q01804 1114 aaKnown RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 CXCL9Q07325 125 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 GPC2Q8N158 579 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 DHX38Q92620 1227 aaKnown RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 PNMA5Q96PV4 448 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SLCO1B3Q9NPD5 702 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SHOC2Q9UQ13 582 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF839A8K0R7 811 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 EDF1O60869 148 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms