RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CREB1P16220 341 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TAC1P20366 129 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 KLC3Q6P597 504 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 MTHFD1LQ6UB35 978 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ALLCQ8N6M5 410 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 PDZD8Q8NEN9 1154 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 IL31RAQ8NI17 732 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 HPDLQ96IR7 371 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SYNPO2Q9UMS6 1093 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 PIAS1O75925 651 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ALADP13716 330 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SKIV2L2P42285 1042 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 CDK16Q00536 496 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SATB1Q01826 763 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 POU5F1BQ06416 359 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TATDN1Q6P1N9 297 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 IZUMO2Q6UXV1 221 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 C4orf22Q6V702 233 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TRIM67Q6ZTA4 783 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TMPRSS6Q8IU80 811 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 RYBPQ8N488 228 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SPDYE1Q8NFV5 336 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SCG3Q8WXD2 468 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 VPS39Q96JC1 886 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 PAPOLBQ9NRJ5 636 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 DMAC2Q9NW81 257 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 DRG1Q9Y295 367 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 PLIN4Q96Q06 1357 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ATP8B3O60423 1300 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ARHGAP10A1A4S6 786 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 BANF1O75531 89 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ENO3P13929 434 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 GCLCP48506 637 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 HADHBP55084 474 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TTLL4Q14679 1199 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 GOLGA7BQ2TAP0 167 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 CRY2Q49AN0 593 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 RMDN2Q96LZ7 410 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 MBOAT7Q96N66 472 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 SRPK1Q96SB4 655 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 MRIQ9BWK5 157 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 DNAJC16Q9Y2G8 782 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ADGRA3Q8IWK6 1321 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 CACNA2D1P54289 1103 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 CCNA1P78396 465 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 TRMT5Q32P41 509 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 C6orf89Q6UWU4 347 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 LRRC74BQ6ZQY2 392 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ECHDC2Q86YB7 292 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC33Q8N5R6 958 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 DRC3Q9H069 523 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 PIM2Q9P1W9 311 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 C19orf81C9J6K1 198 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 EDF1O60869 148 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SPRP35270 261 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 TCF7P36402 384 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CASP2P42575 452 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PTDSS1P48651 473 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PAPOLAP51003 745 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 RPL7AP62424 266 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 KYAT1Q16773 422 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 KIF19Q2TAC6 998 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 FASTKD1Q53R41 847 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 ITPRIPL1Q6GPH6 555 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 POTEAQ6S8J7 498 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CATSPER1Q8NEC5 780 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 EXT2Q93063 718 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CNPY3Q9BT09 278 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 MRPL40Q9NQ50 206 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 UBIAD1Q9Y5Z9 338 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CDY2AQ9Y6F7 541 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CDY1Q9Y6F8 540 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PARP4Q9UKK3 1724 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 IGLV3-22A0A075B6J6 115 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 A0A1W2PPM1 405 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 POLBP06746 335 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PAMP19021 973 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 RANBP1P43487 201 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SULT1E1P49888 294 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PEX5P50542 639 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 ATXN3P54252 364 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 NCKAP1LP55160 1127 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 NOMO3P69849 1222 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 Q3C1V9 767 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PRAMEF18Q5VWM3 479 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 RNF168Q8IYW5 571 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 HELQQ8TDG4 1101 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 RXFP2Q8WXD0 754 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 MYOZ2Q9NPC6 264 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SNED1Q8TER0 1413 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 GLRA3O75311 464 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PDGFRBP09619 1106 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 TXNP10599 105 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CHRNB2P17787 502 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 EFTUD2Q15029 972 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PDK2Q15119 407 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 LRRC38Q5VT99 294 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 TDRD10Q5VZ19 366 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC51AQ86UW1 340 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms