RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TCRBV9S1A1TA0A576 114 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 LINGO3P0C6S8 592 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ARL2P36404 184 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 DPYSL3Q14195 570 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SH3PXD2AQ5TCZ1 1133 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 C1orf228Q6PIY5 440 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CDHR3Q6ZTQ4 885 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 BRSK2Q8IWQ3 736 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 LMNTD2Q8IXW0 634 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 NIM1KQ8IY84 436 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 LRRC71Q8N4P6 559 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ARMC2Q8NEN0 867 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MZB1Q8WU39 189 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 WDR60Q8WVS4 1066 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TEPSINQ96N21 525 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CPXM1Q96SM3 734 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PDGFDQ9GZP0 370 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MARCOQ9UEW3 520 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CORO1CQ9ULV4 474 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MAP3K10Q02779 954 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SLC25A11Q02978 314 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SNX30Q5VWJ9 437 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 XRRA1Q6P2D8 792 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 BTBD10Q9BSF8 475 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SAR1AQ9NR31 198 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF214Q9UL59 606 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SPATA31C2B4DYI2 1134 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 E5RJQ4 531 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 H7C0C1 242 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TRAFD1O14545 582 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CAPN9O14815 690 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 GRAP2O75791 330 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 KRT7P08729 469 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 KITP10721 976 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ATP6V1C1P21283 382 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 YY1P25490 414 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 MIPP30301 263 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 HSPA1LP34931 641 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ATP5OP48047 213 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CDO1Q16878 200 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RINLQ6ZS11 566 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SAMD7Q7Z3H4 446 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SYT15Q9BQS2 421 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 PPP1R12CQ9BZL4 782 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 IQCGQ9H095 443 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ADGRA2Q96PE1 1338 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC195A0A1B0GUA6 201 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TRIM49D1C9J1S8 452 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 MCF2LO15068 1137 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ADCY3O60266 1144 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 LSM8O95777 96 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 EIF4BP23588 611 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 POLR2BP30876 1174 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF200P98182 395 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ENPEPQ07075 957 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SGSM1Q2NKQ1 1148 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TSNAXIP1Q2TAA8 658 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ALYREFQ86V81 257 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 FBXO41Q8TF61 875 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CDHR1Q96JP9 859 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TRIM56Q9BRZ2 755 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 KCNK13Q9HB14 408 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RAB6BQ9NRW1 208 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 NMRK1Q9NWW6 199 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SPDYE5A6NIY4 337 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 GJB1P08034 283 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 IRX4P78413 519 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 BMPR2Q13873 1038 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 PPP1R2P3Q6NXS1 205 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 UBR7Q8N806 425 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 PDCD7Q8N8D1 485 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TTC13Q8NBP0 860 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 UCMAQ8WVF2 138 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 FAF2Q96CS3 445 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ZBTB10Q96DT7 871 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 NMUR2Q9GZQ4 415 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 STOML1Q9UBI4 398 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 A6NHS1 94 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SIGLEC16A6NMB1 481 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 FCHO1O14526 889 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CYB561D2O14569 222 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TM9SF1O15321 606 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 NVLO15381 856 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RNF8O76064 485 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 SERPINB4P48594 390 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CDH6P55285 790 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 BACE1P56817 501 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RCN2Q14257 317 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RASA2Q15283 850 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 TMEM154Q6P9G4 183 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC33Q8N5R6 958 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 ENDOVQ8N8Q3 282 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 RNF149Q8NC42 400 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 PPCSQ9HAB8 311 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 KCNG1Q9UIX4 513 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 HEY1Q9Y5J3 304 aa9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 MYH9P35579 1960 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-215ENST00000512632 IQANK1A0A1B0GTG1 560 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms