RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 SPATA31C2B4DYI2 1134 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 NKRFO15226 690 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 UBA1P22314 1058 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 CNTFP26441 200 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 IFI35P80217 286 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 KDSRQ06136 332 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 CHI3L2Q15782 390 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 MFSD7Q6UXD7 560 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 YTHDF3Q7Z739 585 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 PHF13Q86YI8 300 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 EMC1Q8N766 993 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 PRELID2Q8N945 189 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 HIPK4Q8NE63 616 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 TBCBQ99426 244 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 MYPNQ86TC9 1320 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 DDX3YO15523 660 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 MICAL2O94851 1124 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 GCLCP48506 637 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 PRAMEP78395 509 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 FASTKD1Q53R41 847 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 TDRD10Q5VZ19 366 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 AFG1LQ8WV93 481 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 FAM111AQ96PZ2 611 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 ST6GALNAC4Q9H4F1 302 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 TNPO2O14787 897 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 PPM1FP49593 454 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 CNTN2Q02246 1040 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 POU5F1BQ06416 359 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC26A11Q86WA9 606 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 KIRREL3Q8IZU9 778 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 POLIQ9UNA4 740 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 C17orf102A2RUQ5 167 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 BST2Q10589 180 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 MTM1Q13496 603 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 CUL3Q13618 768 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ANO5Q75V66 913 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ZC3H15Q8WU90 426 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SH3GL2Q99962 352 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 MAF1Q9H063 256 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 CATSPERBQ9H7T0 1116 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DNPEPQ9ULA0 475 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 NUP98P52948 1817 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ATP9AO75110 1047 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SMAD1Q15797 465 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TEDDM1Q5T9Z0 273 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 MROH9Q5TGP6 573 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 NLRP9Q7RTR0 991 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 GPC2Q8N158 579 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 LRRC57Q8N9N7 239 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DRC3Q9H069 523 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 BATF3Q9NR55 127 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 GLRA3O75311 464 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 INSRRP14616 1297 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 PECAM1P16284 738 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 YWHAHQ04917 246 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 NAPEPLDQ6IQ20 393 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ARMC2Q8NEN0 867 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SKA2Q8WVK7 121 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SLITRK1Q96PX8 696 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 MAFO75444 373 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 MYL2P10916 166 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TRADDQ15628 312 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC35G1Q2M3R5 365 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DENND5BQ6ZUT9 1274 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DEFB132Q7Z7B7 95 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 LINC00523Q86TU6 105 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 C20orf96Q9NUD7 363 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DCDC2Q9UHG0 476 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 AP4E1Q9UPM8 1137 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 CICQ96RK0 1608 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 BAZ2AQ9UIF9 1905 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TARSP26639 723 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TAF1CQ15572 869 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ZACNQ401N2 412 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 C4orf50Q6ZRC1 276 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TSPAN17Q96FV3 270 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 NAT9Q9BTE0 207 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 CYP4F11Q9HBI6 524 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ACP6Q9NPH0 428 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SALL4Q9UJQ4 1053 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 TSPAN16Q9UKR8 245 aa11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 ABT1Q9ULW3 272 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 DRG1Q9Y295 367 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-205ENST00000503057 SDR42E2A6NKP2 422 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 M0QYT0 321 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 FSCN2O14926 492 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 FSBPO95073 299 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 HMGCRP04035 888 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 PDHA1P08559 390 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 NCAM1P13591 858 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 MARCKSL1P49006 195 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 NDST1P52848 882 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 PPATQ06203 517 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 EFTUD2Q15029 972 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 FAXCQ5TGI0 409 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SLFN11Q7Z7L1 901 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ADGRF2Q8IZF7 708 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 TEX9Q8N6V9 391 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 P2RX7Q99572 595 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms