RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 PNOCQ13519 176 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 LRRC32Q14392 662 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 ITPRIPL2Q3MIP1 535 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 C1orf220Q5T0J3 134 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 MAMSTRQ6ZN01 415 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 MAML2Q8IZL2 1156 aaPredicted RBP16.74■□□□□ 0.27
HDAC4-213ENST00000496347 ZFYVE19Q96K21 471 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 TIGD1Q96MW7 591 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 ZNF518BQ9C0D4 1074 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 TRPC7Q9HCX4 862 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 GTSE1Q9NYZ3 720 aa16.74■□□□□ 0.27
HDAC4-213ENST00000496347 USP17L7P0C7H9 530 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 TRIM21P19474 475 aaKnown RBP16.73■□□□□ 0.27
HDAC4-213ENST00000496347 CCNE1P24864 410 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 GTF2H1P32780 548 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 ASPAP45381 313 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 RAP1GAPP47736 663 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 PPP2R5DQ14738 602 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 ZNF658Q5TYW1 1059 aaPredicted RBP16.73■□□□□ 0.27
HDAC4-213ENST00000496347 CC2D1AQ6P1N0 951 aaPredicted RBP16.73■□□□□ 0.27
HDAC4-213ENST00000496347 ENGASEQ8NFI3 743 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 SPATA20Q8TB22 786 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 SMARCD1Q96GM5 515 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 FAM83CQ9BQN1 747 aa16.73■□□□□ 0.27
HDAC4-213ENST00000496347 DMXL1Q9Y485 3027 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 HLA-DRAP01903 254 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 TRIM49P0CI25 452 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 TRIM49CP0CI26 452 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 EPB41P11171 864 aaKnown RBP16.72■□□□□ 0.27
HDAC4-213ENST00000496347 TCF3P15923 654 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 MCCD1P59942 119 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-213ENST00000496347 INCA1Q0VD86 236 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 MTAPQ13126 283 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 ADAM9Q13443 819 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 MTF1Q14872 753 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 PDGFRLQ15198 375 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 ZNF77Q15935 545 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 ASCL5Q7RTU5 278 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 FAM35AQ86V20 835 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 UNC93AQ86WB7 457 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 GPIHBP1Q8IV16 184 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 SMYD4Q8IYR2 804 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-213ENST00000496347 SLITRK1Q96PX8 696 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 B3GNT5Q9BYG0 378 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 FAM126AQ9BYI3 521 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-213ENST00000496347 NIF3L1Q9GZT8 377 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 TMEM8AQ9HCN3 771 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 DMAP1Q9NPF5 467 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-213ENST00000496347 TRPM5Q9NZQ8 1165 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 GCNT4Q9P109 453 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 ARHGAP26Q9UNA1 814 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 PCDHGA2Q9Y5H1 932 aa16.72■□□□□ 0.27
HDAC4-213ENST00000496347 SLC16A3O15427 465 aaKnown RBP16.71■□□□□ 0.27
HDAC4-213ENST00000496347 RTN3O95197 1032 aaPredicted RBP16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CHRNB1P11230 501 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 SOX9P48436 509 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 GCLMP48507 274 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CCR3P51677 355 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CACNA2D1P54289 1103 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CDH8P55286 799 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 USP46P62068 366 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 TNK2Q07912 1038 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 DGKKQ5KSL6 1271 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 ELOA2Q8IYF1 753 aaPredicted RBP16.71■□□□□ 0.27
HDAC4-213ENST00000496347 KIAA1958Q8N8K9 716 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CCDC150Q8NCX0 1101 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 RIN3Q8TB24 985 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 OVCA2Q8WZ82 227 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 SMARCE1Q969G3 411 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 TSG101Q99816 390 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 SDCBP2Q9H190 292 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CYP3A43Q9HB55 503 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 HPS4Q9NQG7 708 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 KRT82Q9NSB4 513 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 TMEM30AQ9NV96 361 aa16.71■□□□□ 0.27
HDAC4-213ENST00000496347 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
HDAC4-213ENST00000496347 C2orf78A6NCI8 922 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 ZNF840PA6NDX5 716 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 CETN3O15182 167 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 STX10O60499 249 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 OLFM2O95897 454 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 LMNAP02545 664 aaKnown RBP16.7■□□□□ 0.26
HDAC4-213ENST00000496347 MXI1P50539 228 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 NDST1P52848 882 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 AMPD2Q01433 879 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 LRRC63Q05C16 580 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 PPP3CAQ08209 521 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 RUNX3Q13761 415 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 CCINQ13939 588 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 KRT39Q6A163 491 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 TXNDC11Q6PKC3 985 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 ZC3H3Q8IXZ2 948 aaKnown RBP16.7■□□□□ 0.26
HDAC4-213ENST00000496347 SYNPOQ8N3V7 929 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 CPA6Q8N4T0 437 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 PDZD8Q8NEN9 1154 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 TAS1R2Q8TE23 839 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 NELL1Q92832 810 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 ATP2A3Q93084 1043 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 FAXDC2Q96IV6 333 aa16.7■□□□□ 0.26
HDAC4-213ENST00000496347 SLC22A12Q96S37 553 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms