RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ERV3-1Q14264 604 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 PCBP2Q15366 365 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS50-219ENST00000495039 LEXMQ3ZCV2 418 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 MIER2Q8N344 545 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 PCSK9Q8NBP7 692 aaKnown RBP5.03□□□□□ -1.6
VPS50-219ENST00000495039 LMBRD1Q9NUN5 540 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 POT1Q9NUX5 634 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 TRHDEQ9UKU6 1024 aa5.03□□□□□ -1.6
VPS50-219ENST00000495039 GCATO75600 419 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 FTLP02792 175 aaPredicted RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 MYCLP12524 364 aaPredicted RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 TYRP14679 529 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 FPR3P25089 353 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 VIPR2P41587 438 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 EXOSC9Q06265 439 aaKnown RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 SRSF1Q07955 248 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS50-219ENST00000495039 RNASE12Q5GAN4 147 aaKnown RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 DEPDC1Q5TB30 811 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 EMC10Q5UCC4 262 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 GIMAP6Q6P9H5 292 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 DDX42Q86XP3 938 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS50-219ENST00000495039 SLC15A3Q8IY34 581 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 OSR1Q8TAX0 266 aaPredicted RBP5.02□□□□□ -1.61
VPS50-219ENST00000495039 ZNF398Q8TD17 642 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 OSCP1Q8WVF1 389 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 PLEKHM1Q9Y4G2 1056 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 PCDHA1Q9Y5I3 950 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 ZMYM2Q9UBW7 1377 aa5.02□□□□□ -1.61
VPS50-219ENST00000495039 H3BNX3 289 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 UNC5CO95185 931 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 LRPAP1P30533 357 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 E2F1Q01094 437 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 ZNF91Q05481 1191 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 CYP1B1Q16678 543 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 C4orf46Q504U0 113 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 BRIX1Q8TDN6 353 aaKnown RBP5.01□□□□□ -1.61
VPS50-219ENST00000495039 CCDC17Q96LX7 622 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 SIGLEC11Q96RL6 698 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 MMS19Q96T76 1030 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 SQORQ9Y6N5 450 aa5.01□□□□□ -1.61
VPS50-219ENST00000495039 GABRDO14764 452 aa5□□□□□ -1.61
VPS50-219ENST00000495039 CRYABP02511 175 aaKnown RBP5□□□□□ -1.61
VPS50-219ENST00000495039 GRPP07492 148 aa5□□□□□ -1.61
VPS50-219ENST00000495039 LVRNQ6Q4G3 990 aa5□□□□□ -1.61
VPS50-219ENST00000495039 BCDIN3DQ7Z5W3 292 aaKnown RBP5□□□□□ -1.61
VPS50-219ENST00000495039 PIP4P1Q86T03 277 aa5□□□□□ -1.61
VPS50-219ENST00000495039 PIM3Q86V86 326 aa5□□□□□ -1.61
VPS50-219ENST00000495039 HIPK2Q9H2X6 1198 aa5□□□□□ -1.61
VPS50-219ENST00000495039 TRMT13Q9NUP7 481 aaKnown RBP5□□□□□ -1.61
VPS50-219ENST00000495039 PNPOQ9NVS9 261 aa5□□□□□ -1.61
VPS50-219ENST00000495039 ASIC5Q9NY37 505 aa5□□□□□ -1.61
VPS50-219ENST00000495039 hCG_1984214I3L0E3 225 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 AP4M1O00189 453 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 SMAD6O43541 496 aaKnown RBP4.99□□□□□ -1.61
VPS50-219ENST00000495039 TOMM40O96008 361 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 CSF1RP07333 972 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 PSG1P11464 419 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 ID2Q02363 134 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 NPY5RQ15761 445 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 DEF8Q6ZN54 512 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 CAND1Q86VP6 1230 aaKnown RBP4.99□□□□□ -1.61
VPS50-219ENST00000495039 SFTPA1Q8IWL2 248 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 AMFRQ9UKV5 643 aa4.99□□□□□ -1.61
VPS50-219ENST00000495039 MRPS17Q9Y2R5 130 aaKnown RBP4.99□□□□□ -1.61
VPS50-219ENST00000495039 PHKG2P15735 406 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 HDCP19113 662 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 PDCP20941 246 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ME1P48163 572 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 MAP2K6P52564 334 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 SOX8P57073 446 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ITKQ08881 620 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 MYO1EQ12965 1108 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ANO7Q6IWH7 933 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 DPY19L3Q6ZPD9 716 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ANKRD13BQ86YJ7 626 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 IZUMO1Q8IYV9 350 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ABRAQ8N0Z2 381 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 KRT78Q8N1N4 520 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 ARFGAP1Q8N6T3 406 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 SIRT6Q8N6T7 355 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 PNISRQ8TF01 805 aaKnown RBP4.98□□□□□ -1.61
VPS50-219ENST00000495039 MAP4K1Q92918 833 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 THOC3Q96J01 351 aaKnown RBP4.98□□□□□ -1.61
VPS50-219ENST00000495039 PRR25Q96S07 402 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 CXorf36Q9H7Y0 433 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 XPR1Q9UBH6 696 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 HEY2Q9UBP5 337 aa4.98□□□□□ -1.61
VPS50-219ENST00000495039 B4DGG1 531 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 TLR2O60603 784 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 FGAP02671 866 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 CYP19A1P11511 503 aaPredicted RBP4.97□□□□□ -1.61
VPS50-219ENST00000495039 CYP2C9P11712 490 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 ADORA2AP29274 412 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 MTMR1Q13613 665 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 ODF1Q14990 250 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 RSPRY1Q96DX4 576 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 MTMR8Q96EF0 704 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 SLC13A1Q9BZW2 595 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 FAM234AQ9H0X4 552 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms