RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 KIF4AO95239 1232 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 AFPP02771 609 aaKnown RBP13.02□□□□□ -0.33
UPF3A-210ENST00000493727 SPATA31D3P0C874 917 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 SRFP11831 508 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 TNNI1P19237 187 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 HOXA9P31269 272 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 NOS2P35228 1153 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 UBASH3AP57075 661 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 PSMD5Q16401 504 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 DBN1Q16643 649 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 VWA3BQ502W6 1294 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 RTP2Q5QGT7 225 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 FKBP15Q5T1M5 1219 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 PRSS55Q6UWB4 352 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-210ENST00000493727 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-210ENST00000493727 SPATA31D4Q6ZUB0 917 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 RTL10Q7L3V2 364 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 CEP57Q86XR8 500 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 TRIM59Q8IWR1 403 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 SLC44A3Q8N4M1 653 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 ANP32BQ92688 251 aaKnown RBP13.02□□□□□ -0.33
UPF3A-210ENST00000493727 MYADMQ96S97 322 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 PAAF1Q9BRP4 392 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 TBC1D17Q9HA65 648 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 IFNKQ9P0W0 207 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 R4GN57 208 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 PDCD11Q14690 1871 aaKnown RBP13.02□□□□□ -0.33
UPF3A-210ENST00000493727 LRRIQ3A6PVS8 624 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-210ENST00000493727 TRAPPC3O43617 180 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 XYLBO75191 536 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 TMEM191BP0C7N4 346 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 LAMP2P13473 410 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 RPL17P18621 184 aaKnown RBP13.01□□□□□ -0.33
UPF3A-210ENST00000493727 ENPEPQ07075 957 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 NAB2Q15742 525 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 TMEM164Q5U3C3 297 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 PHLDB3Q6NSJ2 640 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 DCLRE1AQ6PJP8 1040 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 CD302Q8IX05 232 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 LNX1Q8TBB1 728 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-210ENST00000493727 HASPINQ8TF76 798 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 RABGGTAQ92696 567 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 IRF7Q92985 503 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 BORCS6Q96GS4 357 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 CGRRF1Q99675 332 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 ARID3AQ99856 593 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 PDE11AQ9HCR9 933 aa13.01□□□□□ -0.33
UPF3A-210ENST00000493727 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-210ENST00000493727 COL4A3Q01955 1670 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 LGALS16A8MUM7 142 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 LACTBL1A8MY62 500 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 ANHXE9PGG2 379 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 B3GAT3O94766 335 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 TNNC2P02585 160 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 THBS1P07996 1170 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 POU2F2P09086 479 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 FGFR3P22607 806 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 GCLMP48507 274 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 MXI1P50539 228 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 PSMA6P60900 246 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 DLG4P78352 724 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 TFAMQ00059 246 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 MYL7Q01449 175 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 UBXN1Q04323 297 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 CETN1Q12798 172 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 BIRC3Q13489 604 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 TMEM132DQ14C87 1099 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 PPM1LQ5SGD2 360 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 SH3PXD2AQ5TCZ1 1133 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 LMBRD2Q68DH5 695 aaPredicted RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 SARM1Q6SZW1 724 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 RIPOR1Q6ZS17 1223 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 ANKS3Q6ZW76 656 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 GET4Q7L5D6 327 aaPredicted RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 WDR49Q8IV35 697 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 VWA5B2Q8N398 1253 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 GPR161Q8N6U8 529 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 PLEKHO2Q8TD55 490 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 GPR152Q8TDT2 470 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 PARD3BQ8TEW8 1205 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 SCG3Q8WXD2 468 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 SLC35C1Q96A29 364 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 ANKRD36BP1Q96IX9 119 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 PPP1R10Q96QC0 940 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 TSPAN18Q96SJ8 248 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 CLSTN3Q9BQT9 956 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 XPO4Q9C0E2 1151 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 NDST4Q9H3R1 872 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 ASB7Q9H672 318 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 PLEKHA5Q9HAU0 1116 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 GPAMQ9HCL2 828 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 ARHGEF3Q9NR81 526 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 SLC38A7Q9NVC3 462 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 DLL3Q9NYJ7 618 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 CACNG4Q9UBN1 327 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 CA14Q9ULX7 337 aa13□□□□□ -0.33
UPF3A-210ENST00000493727 R3HCC1Q9Y3T6 440 aaKnown RBP13□□□□□ -0.33
UPF3A-210ENST00000493727 MAP1BP46821 2468 aaKnown RBP12.99□□□□□ -0.33
UPF3A-210ENST00000493727 F5P12259 2224 aa12.99□□□□□ -0.33
UPF3A-210ENST00000493727 XPOTO43592 962 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms