RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SCUBE3Q8IX30 993 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CFAP36Q96G28 342 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RBM41Q96IZ5 413 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 EXOC1LA0A1B0GW35 172 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MIF4GDA9UHW6 222 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PODXLO00592 558 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CST8O60676 142 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 POMCP01189 267 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GARTP22102 1010 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 THPOP40225 353 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ATN1P54259 1190 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RHOT1Q8IXI2 618 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SIX6OS1Q8N1H7 587 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GALNT15Q8N3T1 639 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 AGAP3Q96P47 875 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GPR20Q99678 358 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 EPAS1Q99814 870 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZSWIM1Q9BR11 485 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GDF3Q9NR23 364 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CHST7Q9NS84 486 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DPP3Q9NY33 737 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NUDT5Q9UKK9 219 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TSC22D4Q9Y3Q8 395 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 O00370 1275 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZWINTO95229 277 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMED10P49755 219 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PEX5P50542 639 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 OAZ1P54368 228 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 WNT7BP56706 349 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 AP2B1P63010 937 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KIF22Q14807 665 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMCO4Q5TGY1 634 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SNX30Q5VWJ9 437 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RWDD4Q6NW29 188 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TLK2Q86UE8 772 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZBED8Q8IZ13 594 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TRIML2Q8N7C3 387 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RDM1Q8NG50 284 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ATXN7L3BQ96GX2 97 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SIKE1Q9BRV8 207 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMEM121Q9BTD3 319 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GPBP1L1Q9HC44 474 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ERVK-5Q9HDB9 667 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PARVAQ9NVD7 372 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TXNDC16Q9P2K2 825 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ARHGAP10A1A4S6 786 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FOXO6A8MYZ6 492 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MED7O43513 233 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ITKQ08881 620 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 P3H1Q32P28 736 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAP3K21Q5TCX8 1036 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SLC39A4Q6P5W5 647 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ABI1Q8IZP0 508 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DRAXINQ8NBI3 349 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CRYGNQ8WXF5 182 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LPPQ93052 612 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 L3MBTL3Q96JM7 780 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FAM193BQ96PV7 902 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TIPINQ9BVW5 301 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 C17orf75Q9HAS0 396 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RXFP1Q9HBX9 757 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SCINQ9Y6U3 715 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SCN9AQ15858 1988 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GOLGA8CPA6NN73 597 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 A8MUI8 341 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ETS1P14921 441 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HSPA6P17066 643 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAN1A1P33908 653 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PGM1P36871 562 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FLT3P36888 993 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ERMARDQ5T6L9 678 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TINF2Q9BSI4 451 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CDT1Q9H211 546 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PABPC3Q9H361 631 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PRMT7Q9NVM4 692 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAP3K20Q9NYL2 800 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TJP2Q9UDY2 1190 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GTF3C4Q9UKN8 822 aa11.21□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TGFB3P10600 412 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SDC4P31431 198 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PSMD7P51665 324 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PPIL2Q13356 520 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IZUMO3Q5VZ72 239 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SCARA3Q6AZY7 606 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 USP50Q70EL3 339 aaPredicted RBP11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BEST2Q8NFU1 509 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZNF516Q92618 1163 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CGRRF1Q99675 332 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TRIM55Q9BYV6 548 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PPP2R3BQ9Y5P8 575 aa11.21□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MCF2LO15068 1137 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ELNP15502 786 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ARF4P18085 180 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ATP6V1C1P21283 382 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NDST1P52848 882 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BMT2Q1RMZ1 405 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GOLGA7BQ2TAP0 167 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms