RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 SMYD4Q8IYR2 804 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 MAB21L3Q8N8X9 362 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 DEPDC1BQ8WUY9 529 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 MYLPFQ96A32 169 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 XYLT2Q9H1B5 865 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 DPEP3Q9H4B8 488 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 LTB4R2Q9NPC1 389 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 MAGEC2Q9UBF1 373 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 ZFHX2Q9C0A1 2572 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 A8MXQ7 604 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 PTPN1P18031 435 aaKnown RBP11.38□□□□□ -0.59
COL6A3-214ENST00000493608 CCNE1P24864 410 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 GRIK1P39086 918 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 SOX9P48436 509 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 RPL10AP62906 217 aaKnown RBP11.38□□□□□ -0.59
COL6A3-214ENST00000493608 NUCB2P80303 420 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 NCOA4Q13772 614 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 C1orf220Q5T0J3 134 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 ZNF787Q6DD87 383 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 C4orf50Q6ZRC1 276 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 C1orf210Q8IVY1 113 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 FMR1NBQ8N0W7 255 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-214ENST00000493608 TTC16Q8NEE8 873 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 SPATA18Q8TC71 538 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 DNASE1L2Q92874 299 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 SYAP1Q96A49 352 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-214ENST00000493608 EEF2KMTQ96G04 330 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 PCED1BQ96HM7 432 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 CYP2S1Q96SQ9 504 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 SMYD3Q9H7B4 428 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 TRPC7Q9HCX4 862 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 ABCB6Q9NP58 842 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 PCDHGC3Q9UN70 934 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 CCL26Q9Y258 94 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 FRMD4BQ9Y2L6 1034 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 PIAS3Q9Y6X2 628 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 USP34Q70CQ2 3546 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 COL4A2P08572 1712 aa11.38□□□□□ -0.59
COL6A3-214ENST00000493608 CLDN5O00501 218 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CHADO15335 359 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TACC1O75410 805 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TADA3O75528 432 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 AKAP3O75969 853 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 NOL4O94818 638 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TRIM49P0CI25 452 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TRIM49CP0CI26 452 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 NR2F2P24468 414 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ATICP31939 592 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CACNA2D1P54289 1103 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CLDN10P78369 228 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TNK2Q07912 1038 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 FZD5Q13467 585 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 KCNB1Q14721 858 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ZNF699Q32M78 642 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CFAP221Q4G0U5 840 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ZNF667Q5HYK9 610 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ISM2Q6H9L7 571 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 SPOPLQ6IQ16 392 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CMTM8Q8IZV2 173 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 GUF1Q8N442 669 aaKnown RBP11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ENGASEQ8NFI3 743 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 BPIFB1Q8TDL5 484 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 CSGALNACT1Q8TDX6 532 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 FAM3CQ92520 227 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 MRPS31Q92665 395 aaKnown RBP11.37□□□□□ -0.59
COL6A3-214ENST00000493608 E2F7Q96AV8 911 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 FUBP3Q96I24 572 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL6A3-214ENST00000493608 SLC22A12Q96S37 553 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 BCO2Q9BYV7 579 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 SDCBP2Q9H190 292 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 MMRN2Q9H8L6 949 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TMEM30AQ9NV96 361 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 SPATA6Q9NWH7 488 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-214ENST00000493608 GTSE1Q9NYZ3 720 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 TRAF3IP3Q9Y228 551 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 R4GN57 208 aa11.37□□□□□ -0.59
COL6A3-214ENST00000493608 ARNTLO00327 626 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 ZBTB24O43167 697 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 KIF20AO95235 890 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 STAU1O95793 577 aaKnown RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 HLA-DRAP01903 254 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 AVPR1AP37288 418 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 GCLMP48507 274 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 VAMP7P51809 220 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 KPNA1P52294 538 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 FCHO2Q0JRZ9 810 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 IFRD2Q12894 506 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 ORC1Q13415 861 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 ADAM9Q13443 819 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 MAPRE1Q15691 268 aaKnown RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 ZACNQ401N2 412 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 TRIM68Q6AZZ1 485 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 SV2AQ7L0J3 742 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 ASCL5Q7RTU5 278 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 MAML2Q8IZL2 1156 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 CELF5Q8N6W0 485 aaKnown RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 RIN3Q8TB24 985 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 MYCBPAPQ8TBZ2 947 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 USP13Q92995 863 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 NELL2Q99435 816 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms