RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 IFNL1Q8IU54 200 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 KCTD6Q8NC69 237 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 ACTL9Q8TC94 416 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 TMEM121Q9BTD3 319 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 SLC4A5Q9BY07 1137 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 FRMD8P1Q9BZ68 369 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 FOXP3Q9BZS1 431 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 RNF39Q9H2S5 420 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 NMRK2Q9NPI5 230 aa22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 SAE1Q9UBE0 346 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-208ENST00000492980 CRYBB1P53674 252 aaPredicted RBP22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 SEC24CP53992 1094 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 GPS1Q13098 491 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 FSCN1Q16658 493 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 XKR4Q5GH76 650 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 OLFML1Q6UWY5 402 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 CYP4V2Q6ZWL3 525 aaPredicted RBP22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 TTC13Q8NBP0 860 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 OR6B3Q8NGW1 331 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 SOCS4Q8WXH5 440 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 HSPH1Q92598 858 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 PCDH9Q9HC56 1237 aa22.14■■□□□ 1.13
CCDC88B-208ENST00000492980 CD4P01730 458 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 PDGFRAP16234 1089 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 MMP13P45452 471 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 PURAQ00577 322 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 PLCB3Q01970 1234 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 LONRF1Q17RB8 773 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 C15orf59Q2T9L4 293 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 RAB6CQ53S08 254 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 FBXO47Q5MNV8 452 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 ARHGAP17Q68EM7 881 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 NLRP14Q86W24 1093 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 SLC35F5Q8WV83 523 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 RAB6CQ9H0N0 254 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 DPEP3Q9H4B8 488 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 HCRTO43612 131 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 GRAP2O75791 330 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 KCNE1P15382 129 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 TMEM110Q86TL2 294 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 KBTBD7Q8WVZ9 684 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 LPIN3Q9BQK8 851 aa22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 STMN4Q9H169 189 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 PPANQ9NQ55 473 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 TPX2Q9ULW0 747 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-208ENST00000492980 SGK1O00141 431 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 SPTLC1O15269 473 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 RFX6Q8HWS3 928 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 NME8Q8N427 588 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 MYCBPAPQ8TBZ2 947 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 MDM1Q8TC05 714 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 HESX1Q9UBX0 185 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 A8MXQ7 604 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 E7EVH7 732 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 DPYSL4O14531 572 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 TNPO2O14787 897 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 GABBR2O75899 941 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 ENDOD1O94919 500 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 FGFR1P11362 822 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 CCDC14Q49A88 953 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 RGMBQ6NW40 437 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 CEP128Q6ZU80 1094 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 C7orf31Q8N865 590 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 ZNF560Q96MR9 790 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 SERPINB12Q96P63 405 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 CCT8L2Q96SF2 557 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 TSPAN18Q96SJ8 248 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 RBM15Q96T37 977 aaKnown RBP eCLIP22.12■■□□□ 1.134e-6■■■□□ 14.7
CCDC88B-208ENST00000492980 IPPQ9Y573 584 aa22.12■■□□□ 1.13
CCDC88B-208ENST00000492980 KPNA7A9QM74 516 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 TRAPPC3O43617 180 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 GNAT1P11488 350 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 CDR1P51861 262 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 SLC6A3Q01959 620 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 SOX4Q06945 474 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 PDE4CQ08493 712 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 MORF4L2Q15014 288 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 RNASEH2BQ5TBB1 312 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 SRLQ86TD4 932 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 SMG8Q8ND04 991 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 ZNF473Q8WTR7 871 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 KHSRPQ92945 711 aaKnown RBP eCLIP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 C9orf72Q96LT7 481 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 CALN1Q9BXU9 219 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 GDAP2Q9NXN4 497 aa22.11■■□□□ 1.13
CCDC88B-208ENST00000492980 MYADML2A6NDP7 307 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 EBAG9O00559 213 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 XPOTO43592 962 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 TCEA3O75764 348 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 IFNB1P01574 187 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 MAGEA4P43358 317 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 CDO1Q16878 200 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 SAPCD2Q86UD0 394 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 SESTD1Q86VW0 696 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 ARRDC4Q8NCT1 418 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 STK32AQ8WU08 396 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 CFAP57Q96MR6 1250 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 SELENOSQ9BQE4 189 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 RSAD1Q9HA92 442 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms