RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLC15A3Q8IY34 581 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 ABRAQ8N0Z2 381 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 MPP5Q8N3R9 675 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 OR56A3Q8NH54 315 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 CYP2W1Q8TAV3 490 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 BPIFB1Q8TDL5 484 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 SOCS4Q8WXH5 440 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 MOGAT1Q96PD6 335 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 KRTAP1-5Q9BYS1 174 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 C22orf23Q9BZE7 217 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 FLRT1Q9NZU1 646 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 ZNF70Q9UC06 446 aaPredicted RBP4.06□□□□□ -1.76
VPS50-216ENST00000484954 MYO1CO00159 1063 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 MYO1FO00160 1098 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 PHGDHO43175 533 aaKnown RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 PRR35P0CG20 571 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 CYP2D6P10635 497 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 EN2P19622 333 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 LRPAP1P30533 357 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 SLC7A1P30825 629 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 PDE6CP51160 858 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 ZNF81P51508 661 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 WNT3P56703 355 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 SSBP2P81877 361 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 NFE2Q16621 373 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 SRSF7Q16629 238 aaKnown RBP eCLIP4.05□□□□□ -1.76
VPS50-216ENST00000484954 SUPT20HL1Q3ZLR7 823 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 ZNF626Q68DY1 528 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 SLC9A4Q6AI14 798 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 FCRL6Q6DN72 434 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 PARS2Q7L3T8 475 aaKnown RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 MAEAQ7L5Y9 396 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 WDR53Q7Z5U6 358 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 CHSY1Q86X52 802 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 KIAA0319LQ8IZA0 1049 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 OR6B3Q8NGW1 331 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 OSCP1Q8WVF1 389 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 THAP7Q9BT49 309 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 QTRT1Q9BXR0 403 aaKnown RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 GBA2Q9HCG7 927 aaPredicted RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 CPNE7Q9UBL6 633 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 DDX20Q9UHI6 824 aaKnown RBP4.05□□□□□ -1.76
VPS50-216ENST00000484954 GABRQQ9UN88 632 aa4.05□□□□□ -1.76
VPS50-216ENST00000484954 PRRT4C9JH25 899 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 AP4M1O00189 453 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 TP73O15350 636 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 CYP2C9P11712 490 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 SFPQP23246 707 aaKnown RBP eCLIP4.04□□□□□ -1.76
VPS50-216ENST00000484954 EPHB2P29323 1055 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 TUBA4AP68366 448 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 E2F1Q01094 437 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 MAPK7Q13164 816 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 KLF9Q13886 244 aaPredicted RBP4.04□□□□□ -1.76
VPS50-216ENST00000484954 MGAT5BQ3V5L5 792 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 MTX3Q5HYI7 312 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 FAM102BQ5T8I3 360 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 KIRREL2Q6UWL6 708 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 KCTD20Q7Z5Y7 419 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 YTHDF3Q7Z739 585 aaKnown RBP4.04□□□□□ -1.76
VPS50-216ENST00000484954 CAND1Q86VP6 1230 aaKnown RBP4.04□□□□□ -1.76
VPS50-216ENST00000484954 MICU3Q86XE3 530 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 IZUMO1Q8IYV9 350 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 RP9Q8TA86 221 aaKnown RBP4.04□□□□□ -1.76
VPS50-216ENST00000484954 PPP2R3CQ969Q6 453 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 PRR25Q96S07 402 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 C17orf80Q9BSJ5 609 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 C1QTNF7Q9BXJ2 289 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 TMEM60Q9H2L4 133 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 LPAR3Q9UBY5 353 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 CCNL1Q9UK58 526 aaPredicted RBP4.04□□□□□ -1.76
VPS50-216ENST00000484954 EID1Q9Y6B2 187 aa4.04□□□□□ -1.76
VPS50-216ENST00000484954 CAPN8A6NHC0 703 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 ADAMTS3O15072 1205 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 TBC1D4O60343 1298 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 EXOC3O60645 756 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 TJP3O95049 919 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 NPSP0C0P6 89 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 PRKAG1P54619 331 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 SUMO3P55854 103 aaPredicted RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 TPTEP56180 551 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 GPSM2P81274 684 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 PSG6Q00889 435 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 CNN3Q15417 329 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 EZH2Q15910 746 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 SLC44A4Q53GD3 710 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 RNASE12Q5GAN4 147 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 L1TD1Q5T7N2 865 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 CXorf57Q6NSI4 855 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 ZNF804AQ7Z570 1209 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 CHPFQ8IZ52 775 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 PNLDC1Q8NA58 520 aaKnown RBP4.03□□□□□ -1.76
VPS50-216ENST00000484954 DNAJB14Q8TBM8 379 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 RITA1Q96K30 269 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 PDGFCQ9NRA1 345 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 L1RE1Q9UN81 338 aa4.03□□□□□ -1.76
VPS50-216ENST00000484954 CFAP69A5D8W1 941 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 KELP23276 732 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 ALDH5A1P51649 535 aaPredicted RBP4.02□□□□□ -1.77
VPS50-216ENST00000484954 HOXA4Q00056 320 aaPredicted RBP4.02□□□□□ -1.77
VPS50-216ENST00000484954 RAB32Q13637 225 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms