RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 SMPD4Q9NXE4 827 aa18.55■□□□□ 0.56
ECHDC1-216ENST00000479525 GCNT4Q9P109 453 aa18.55■□□□□ 0.56
ECHDC1-216ENST00000479525 HPSEQ9Y251 543 aa18.55■□□□□ 0.56
ECHDC1-216ENST00000479525 MAGEA11P43364 429 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 KRT85P78386 507 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 FAM160A1Q05DH4 1040 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 USP4Q13107 963 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 KCNB1Q14721 858 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 ZNF699Q32M78 642 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 ATL3Q6DD88 541 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 DENND5BQ6ZUT9 1274 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 C12orf56Q8IXR9 622 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 SPEM1Q8N4L4 309 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 FSIP1Q8NA03 581 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 PARD3BQ8TEW8 1205 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 EPC1Q9H2F5 836 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 MMRN2Q9H8L6 949 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 PARD6AQ9NPB6 346 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 DUS2Q9NX74 493 aaKnown RBP18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 HMGXB4Q9UGU5 601 aa18.54■□□□□ 0.56
ECHDC1-216ENST00000479525 SDK1Q7Z5N4 2213 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 HRO43593 1189 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 RNF40O75150 1001 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 NR3C1P04150 777 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 RPN1P04843 607 aaKnown RBP18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 USP17L7P0C7H9 530 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 HDCP19113 662 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 CMA1P23946 247 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 SYKP43405 635 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 IFNAR2P48551 515 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 B3GALNT2Q8NCR0 500 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 MSANTD3Q96H12 275 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 KCNK16Q96T55 309 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 MED10Q9BTT4 135 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 KIF9Q9HAQ2 790 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 DMAC2Q9NW81 257 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 USP18Q9UMW8 372 aa18.53■□□□□ 0.56
ECHDC1-216ENST00000479525 TACC1O75410 805 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 C4BPAP04003 597 aaKnown RBP18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 TRIM49P0CI25 452 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 TRIM49CP0CI26 452 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 GJA4P35212 333 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 GALK1P51570 392 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 MLLT6P55198 1093 aaPredicted RBP18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 SPEM2Q0P670 501 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 TAF10Q12962 218 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 PSMD2Q13200 908 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 NCOA4Q13772 614 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 DGKKQ5KSL6 1271 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 EZH1Q92800 747 aaPredicted RBP18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 SPATA17Q96L03 361 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 RNF38Q9H0F5 515 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 ECT2Q9H8V3 914 aa18.52■□□□□ 0.55
ECHDC1-216ENST00000479525 SPAG17Q6Q759 2223 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 TRIM66O15016 1216 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 CCDC130P13994 396 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 SNRPFP62306 86 aaKnown RBP18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 RSPO4Q2I0M5 234 aaPredicted RBP18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 EML3Q32P44 896 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 ZNF667Q5HYK9 610 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 TMEM196Q5HYL7 178 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 C1orf220Q5T0J3 134 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 VSTM1Q6UX27 236 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 ACOT1Q86TX2 421 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 SMYD4Q8IYR2 804 aaPredicted RBP18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 SCAMP5Q8TAC9 235 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 OSCP1Q8WVF1 389 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 SYAP1Q96A49 352 aaPredicted RBP18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 EEF2KMTQ96G04 330 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 HHIPQ96QV1 700 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 TRPM5Q9NZQ8 1165 aa18.51■□□□□ 0.55
ECHDC1-216ENST00000479525 LEFTY2O00292 366 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 PDIA4P13667 645 aaKnown RBP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 GRSF1Q12849 480 aaKnown RBP eCLIP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 SIM2Q14190 667 aaPredicted RBP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 ZNF268Q14587 947 aaPredicted RBP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 PPP2R5DQ14738 602 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 MAPRE1Q15691 268 aaKnown RBP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 CCDC6Q16204 474 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 PAQR9Q6ZVX9 377 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 FAM35AQ86V20 835 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 SFTPA1Q8IWL2 248 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 JAKMIP2Q96AA8 810 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 FAM49BQ9NUQ9 324 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 CGNQ9P2M7 1197 aaKnown RBP18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 CPQQ9Y646 472 aa18.5■□□□□ 0.55
ECHDC1-216ENST00000479525 ZNF840PA6NDX5 716 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 BEST1O76090 585 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 PIK3CAP42336 1068 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 PGFP49763 221 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 NRLP54845 237 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 SEC13P55735 322 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 CPA6Q8N4T0 437 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 RPLP0P6Q8NHW5 317 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 ERCC4Q92889 916 aaPredicted RBP18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 C8orf48Q96LL4 319 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 P2RY13Q9BPV8 354 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 IER2Q9BTL4 223 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 TTLL2Q9BWV7 592 aa18.49■□□□□ 0.55
ECHDC1-216ENST00000479525 FAM126AQ9BYI3 521 aaPredicted RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms