RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DOCK6Q96HP0 2047 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 DOCK8Q8NF50 2099 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 SMIM28A0A1B0GU29 152 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CCDC195A0A1B0GUA6 201 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 TMEM221A6NGB7 291 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 C2CD4DB7Z1M9 353 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 TMEM189-UBE2V1I3L0A0 370 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 M0R296 226 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 TOM1L1O75674 476 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 B3GAT3O94766 335 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 BRD1O95696 1058 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PLCG1P19174 1290 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 SYT1P21579 422 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 SCP2P22307 547 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PROZP22891 400 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 OSTNP61366 133 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 SIGLEC14Q08ET2 396 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 NOLC1Q14978 699 aaKnown RBP eCLIP7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 NAB2Q15742 525 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 GLRA4Q5JXX5 417 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 FAM171A1Q5VUB5 890 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PHLDB3Q6NSJ2 640 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ALKAL1Q6UXT8 129 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CYP26C1Q6V0L0 522 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ZPBP2Q6X784 338 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CCDC149Q6ZUS6 474 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 GPBP1Q86WP2 473 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CEP57Q86XR8 500 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PALB2Q86YC2 1186 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ZDHHC14Q8IZN3 488 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 TMEM161BQ8NDZ6 487 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 HDAC7Q8WUI4 952 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ACSF2Q96CM8 615 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 FAM122AQ96E09 287 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 B3GALT6Q96L58 329 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 SNX27Q96L92 541 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ACAP3Q96P50 834 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PPP1R10Q96QC0 940 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 RHOBTB2Q9BYZ6 727 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CCSER1Q9C0I3 900 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CXCL16Q9H2A7 254 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 PLEKHA4Q9H4M7 779 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 NPHS2Q9NP85 383 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 SLC38A7Q9NVC3 462 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ZDHHC7Q9NXF8 308 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ANKFY1Q9P2R3 1169 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 USTQ9Y2C2 406 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 CLIC4Q9Y696 253 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 KMT2EQ8IZD2 1858 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 WDFY4Q6ZS81 3184 aa7.42□□□□□ -1.22
CCDC88A-213ENST00000476903 ANK1P16157 1881 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 NPHP3-ACAD11A0A0J9YXS1 232 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 K7ENM7 598 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 ABLIM1O14639 778 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 CLDN3O15551 220 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 TGM5O43548 720 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 TRAPPC3O43617 180 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 TBCAO75347 108 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KRT18P05783 430 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 SPATA31D3P0C874 917 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 HARSP12081 509 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KCNE1P15382 129 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 RPL17P18621 184 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 ABCD1P33897 745 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 PLA2G5P39877 138 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 MATR3P43243 847 aaKnown RBP eCLIP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 CLCNKBP51801 687 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 NCKAP1LP55160 1127 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 GRIN1Q05586 938 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 MCL1Q07820 350 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 RESTQ13127 1097 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 DHX8Q14562 1220 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KARSQ15046 597 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 PSMD5Q16401 504 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 UPP1Q16831 310 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 ZC3H12AQ5D1E8 599 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 ARSHQ5FYA8 562 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 XKR4Q5GH76 650 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 RTP2Q5QGT7 225 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 DCLRE1AQ6PJP8 1040 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 PRSS55Q6UWB4 352 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 SPATA31D4Q6ZUB0 917 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 OTOP3Q7RTS5 596 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 HAUS6Q7Z4H7 955 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 BMP8AQ7Z5Y6 402 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 GLYCTKQ8IVS8 523 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 UBALD2Q8IYN6 164 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 MYCT1Q8N699 235 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KREMEN2Q8NCW0 462 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 LNX1Q8TBB1 728 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 SMG7Q92540 1137 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 RAD54LQ92698 747 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 STAMQ92783 540 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KCNN1Q92952 543 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 BICD1Q96G01 975 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 REEP2Q9BRK0 252 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 KCNH6Q9H252 994 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 PARVGQ9HBI0 331 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 BLOC1S4Q9NUP1 217 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms