RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NOC3LQ8WTT2 800 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MYLPFQ96A32 169 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 C8orf48Q96LL4 319 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RTKNQ9BST9 563 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LINC00597Q9H2U6 94 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SEMA4GQ9NTN9 838 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DMAC2Q9NW81 257 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DUS2Q9NX74 493 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RCOR1Q9UKL0 485 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ZNF840PA6NDX5 716 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ATG13O75143 517 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 RNF40O75150 1001 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ZSCAN22P10073 491 aaPredicted RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 DLATP10515 647 aaKnown RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CHRM1P11229 460 aaPredicted RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 HDCP19113 662 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SLC7A9P82251 487 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CUL4BQ13620 913 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 KNOP1Q1ED39 458 aaKnown RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 FBXO43Q4G163 708 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CC2D1AQ6P1N0 951 aaPredicted RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 DENND5BQ6ZUT9 1274 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SH3RF2Q8TEC5 729 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 GAB3Q8WWW8 586 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 LOXL4Q96JB6 756 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ZC3H10Q96K80 434 aaKnown RBP13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 P2RY13Q9BPV8 354 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 RNF38Q9H0F5 515 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 BLZF1Q9H2G9 400 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 IL37Q9NZH6 218 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 USP18Q9UMW8 372 aa13.08□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 F8VP50 259 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SLC30A4O14863 429 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TRIM66O15016 1216 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 AKAP3O75969 853 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 F13A1P00488 732 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 OAS1P00973 400 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CKMP06732 381 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PTPN1P18031 435 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TNNI1P19237 187 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ATICP31939 592 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 GRIK1P39086 918 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PPP3CCP48454 512 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CYP2J2P51589 502 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CACNA2D1P54289 1103 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 MYL6P60660 151 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 WDR72Q3MJ13 1102 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PRR23CQ6ZRP0 262 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SYT13Q7L8C5 426 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SLC9A9Q8IVB4 645 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 NELFCDQ8IXH7 590 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ADGRG2Q8IZP9 1017 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CPA6Q8N4T0 437 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 NETO1Q8TDF5 533 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PARD3BQ8TEW8 1205 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ATP2A3Q93084 1043 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 MMS19Q96T76 1030 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TRPC7Q9HCX4 862 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SLC39A2Q9NP94 309 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 POLR3BQ9NW08 1133 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 WNT6Q9Y6F9 365 aa13.07□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 NUP205Q92621 2012 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CACNA1BQ00975 2339 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 A0A0A0MRY4 1105 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TM4SF5O14894 197 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 ACTN4O43707 911 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 C4BPAP04003 597 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 SLFN14P0C7P3 912 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 OPRD1P41143 372 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PDE6CP51160 858 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 STK4Q13043 487 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PKP1Q13835 747 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 MDH1BQ5I0G3 518 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PLA2G2CQ5R387 149 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 PAQR9Q6ZVX9 377 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 HS2ST1Q7LGA3 356 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 KIAA0895Q8NCT3 520 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CD101Q93033 1021 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CCDC127Q96BQ5 260 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 FNBP1Q96RU3 617 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 B3GNT5Q9BYG0 378 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 KCTD10Q9H3F6 313 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 DPEP3Q9H4B8 488 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TRPM5Q9NZQ8 1165 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 EBF1Q9UH73 591 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 CDV3Q9UKY7 258 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 R3HCC1Q9Y3T6 440 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 GON4LQ3T8J9 2241 aa13.06□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 MYH10P35580 1976 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 FAM92AA1XBS5 289 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 DCDC2BA2VCK2 349 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 K7EQS6 105 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 LEFTY2O00292 366 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TULP1O00294 542 aaPredicted RBP13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 TNFRSF10BO14763 440 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 GDF9O60383 454 aa13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 FOXD2O60548 495 aaPredicted RBP13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 RPP40O75818 363 aaKnown RBP13.05□□□□□ -0.32
MSH5-SAPCD1-205ENST00000476085 EPN2O95208 641 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms