RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SLC39A10	Q9ULF5	831 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	FAM234B	A2RU67	622 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZAR1L	A6NP61	321 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PIAS2	O75928	621 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC5A2	P31639	672 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	TRAPPC10	P48553	1259 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PDE6C	P51160	858 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PRKAG1	P54619	331 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	BCAT1	P54687	386 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	DGCR2	P98153	550 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTPRR	Q15256	657 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PUM3	Q15397	648 aa	Known RBP	4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	RAB30	Q15771	203 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	MAPKAPK3	Q16644	382 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC5A9	Q2M3M2	681 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTCHD3	Q3KNS1	767 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	LSM12	Q3MHD2	195 aa	Known RBP	4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PRR16	Q569H4	304 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	MANEAL	Q5VSG8	457 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	CACHD1	Q5VU97	1274 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	ARL6IP4	Q66PJ3	421 aa	Known RBP	4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	KIAA0895L	Q68EN5	471 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SPRED1	Q7Z699	444 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SPART	Q8N0X7	666 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	ABRA	Q8N0Z2	381 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PROKR1	Q8TCW9	393 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	ASB10	Q8WXI3	467 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	LPIN2	Q92539	896 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	PGBD1	Q96JS3	809 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	ACTRT3	Q9BYD9	372 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	TPSD1	Q9BZJ3	242 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SERHL2	Q9H4I8	314 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	SERTAD3	Q9UJW9	196 aa		4.56	□□□□□ -1.68
PTCD3-209	ENST00000472044	COL4A3	Q01955	1670 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	OR2W5	A6NFC9	320 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	KRTAP9-7	A8MTY7	169 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	PODXL	O00592	558 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	TLR5	O60602	858 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	SRGAP2	O75044	1071 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	SKAP2	O75563	359 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	RASAL1	O95294	804 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	TGM1	P22735	817 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	PDIA3	P30101	505 aa	Known RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	PRKAR1B	P31321	381 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ATIC	P31939	592 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZEB1	P37275	1124 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ATXN1	P54253	815 aa	Known RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	TIAL1	Q01085	375 aa	Known RBP eCLIP	4.55	□□□□□ -1.68	5e-7	■■■■□ 26.5
PTCD3-209	ENST00000472044	TAP1	Q03518	808 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	SF3B3	Q15393	1217 aa	Known RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	TUBB8	Q3ZCM7	444 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	LCE4A	Q5TA78	99 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	MRNIP	Q6NTE8	343 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	FBXO38	Q6PIJ6	1188 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	KCNV1	Q6PIU1	500 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	CRTC1	Q6UUV9	634 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	TSHZ1	Q6ZSZ6	1077 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	B3GALNT2	Q8NCR0	500 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	DNAJB14	Q8TBM8	379 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ATG4A	Q8WYN0	398 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	C18orf8	Q96DM3	657 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	RSPRY1	Q96DX4	576 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	GPR20	Q99678	358 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	HERPUD2	Q9BSE4	406 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	MLST8	Q9BVC4	326 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ALG8	Q9BVK2	526 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	WDR11	Q9BZH6	1224 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZCWPW1	Q9H0M4	648 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	AS3MT	Q9HBK9	375 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	GBA2	Q9HCG7	927 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	KCTD5	Q9NXV2	234 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ANKFY1	Q9P2R3	1169 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	VPS51	Q9UID3	782 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	CA14	Q9ULX7	337 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	HPSE	Q9Y251	543 aa		4.55	□□□□□ -1.68
PTCD3-209	ENST00000472044	MAST3	O60307	1309 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	WDR27	A2RRH5	827 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	ADM5	C9JUS6	153 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	NPC1	O15118	1278 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	PPM1D	O15297	605 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC16A3	O15427	465 aa	Known RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	MPPED1	O15442	326 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	RGS10	O43665	173 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	COQ9	O75208	318 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	CSTB	P04080	98 aa	Known RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	ITGAM	P11215	1152 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	MAK	P20794	623 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	EPHA3	P29320	983 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	UQCRC1	P31930	480 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	SP2	Q02086	613 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	GALNT1	Q10472	559 aa	Predicted RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	FOXO1	Q12778	655 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	BLMH	Q13867	455 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTK2B	Q14289	1009 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	KCNAB1	Q14722	419 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTPA	Q15257	358 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	PDCD2	Q16342	344 aa	Predicted RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	NBPF8	Q3BBV2	869 aa		4.54	□□□□□ -1.68

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