RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 LRRC38Q5VT99 294 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ALLCQ8N6M5 410 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 KIF12Q96FN5 646 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 SEC16BQ96JE7 1060 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 LHX5Q9H2C1 402 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 SAYSD1Q9NPB0 183 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 PPEF2O14830 753 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CHUKO15111 745 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CST8O60676 142 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 DRD4P21917 467 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 GDF10P55107 478 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 GAD2Q05329 585 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 FAM187BQ17R55 369 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TNFAIP8L3Q5GJ75 292 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 PRAMEF19Q5SWL8 479 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 FAM102AQ5T9C2 384 aaPredicted RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TAX1BP1Q86VP1 789 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ANKRD42Q8N9B4 389 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 MRRFQ96E11 262 aaKnown RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 SPDL1Q96EA4 605 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CHMP6Q96FZ7 201 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ACAP3Q96P50 834 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 IQCGQ9H095 443 aaKnown RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CDHR5Q9HBB8 845 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 VTA1Q9NP79 307 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 KCNK9Q9NPC2 374 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 DPP3Q9NY33 737 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 GPD2P43304 727 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 MAGEA4P43358 317 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 RGS7P49802 495 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 VCPP55072 806 aaKnown RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 OTUD4Q01804 1114 aaKnown RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CAV1Q03135 178 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TNFAIP2Q03169 654 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TAP1Q03518 808 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 LAMB3Q13751 1172 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TRIP11Q15643 1979 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 OASLQ15646 514 aaKnown RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 CDO1Q16878 200 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 GLRA4Q5JXX5 417 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 MFSD5Q6N075 450 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 NIPA2Q8N8Q9 360 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ACTL9Q8TC94 416 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 KAT6AQ92794 2004 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 LENG1Q96BZ8 264 aaPredicted RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 LPIN3Q9BQK8 851 aa12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ROPN1BQ9BZX4 212 aaPredicted RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 ROPN1Q9HAT0 212 aaPredicted RBP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.67□□□□□ -0.38
COL27A1-202ENST00000451716 TMEM120BA0PK00 339 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ATP2C2O75185 946 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 PIAS1O75925 651 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 MIPP30301 263 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 SPRED3Q2MJR0 410 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 GPR142Q7Z601 462 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 LRRC34Q8IZ02 419 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ZNF317Q96PQ6 595 aaPredicted RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 CALN1Q9BXU9 219 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ASB7Q9H672 318 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 SRRM3A6NNA2 597 aaPredicted RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 DNALI1O14645 258 aaPredicted RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 NPTXRO95502 500 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 VIMP08670 466 aaKnown RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 KDELR1P24390 212 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 MAGEA10P43363 369 aaPredicted RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 MPP2Q14168 576 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 CNGA2Q16280 664 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 C15orf59Q2T9L4 293 aaPredicted RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 TRNP1Q6NT89 227 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ZCCHC9Q8N567 271 aaKnown RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 KCTD6Q8NC69 237 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 OR6J1Q8NGC5 347 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ZMAT2Q96NC0 199 aaKnown RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 SERPINB12Q96P63 405 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 ADPGKQ9BRR6 497 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 DDX56Q9NY93 547 aaKnown RBP12.66□□□□□ -0.38
COL27A1-202ENST00000451716 SNTG2Q9NY99 539 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 PLXNA1Q9UIW2 1896 aa12.66□□□□□ -0.38
COL27A1-202ENST00000451716 E5RJQ4 531 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 HCRTO43612 131 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 RTN3O95197 1032 aaPredicted RBP12.65□□□□□ -0.38
COL27A1-202ENST00000451716 LMNB2Q03252 620 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 MMRN1Q13201 1228 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 DBN1Q16643 649 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 SYCP2LQ5T4T6 812 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 C6orf89Q6UWU4 347 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 TAOK1Q7L7X3 1001 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 SRRM1Q8IYB3 904 aaKnown RBP12.65□□□□□ -0.38
COL27A1-202ENST00000451716 B4GALNT2Q8NHY0 566 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 APOL6Q9BWW8 343 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 EIF2AQ9BY44 585 aaKnown RBP12.65□□□□□ -0.38
COL27A1-202ENST00000451716 STMN4Q9H169 189 aaPredicted RBP12.65□□□□□ -0.38
COL27A1-202ENST00000451716 FAM49BQ9NUQ9 324 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 TSPAN16Q9UKR8 245 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 NAALADL1Q9UQQ1 740 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 SCN1AP35498 2009 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 MMP3P08254 477 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 COPS2P61201 443 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 POU5F1BQ06416 359 aa12.65□□□□□ -0.38
COL27A1-202ENST00000451716 MYO1EQ12965 1108 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms